S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990.
DOI : 10.1016/S0022-2836(05)80360-2

J. Ceron, J. F. Rual, A. Chandra, D. Dupuy, and M. Vidal, Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity, BMC Developmental Biology, vol.7, issue.1, p.30, 2007.
DOI : 10.1186/1471-213X-7-30

I. Engelmann, A. Griffon, L. Tichit, F. Montanana-sanchis, and G. Wang, A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans, PLoS ONE, vol.104, issue.5, p.19055
DOI : 10.1371/journal.pone.0019055.s022
URL : https://hal.archives-ouvertes.fr/hal-01261853

B. T. Fievet, J. Rodriguez, S. Naganathan, C. Lee, and E. Zeiser, Systematic genetic interaction screens uncover cell polarity regulators and functional redundancy, Nature Cell Biology, vol.115, issue.1, pp.103-112, 2013.
DOI : 10.1101/gr.1239303
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836181

J. I. Gent, A. T. Lamm, D. M. Pavelec, J. M. Maniar, and P. Parameswaran, Distinct Phases of siRNA Synthesis in an Endogenous RNAi Pathway in C. elegans Soma, Molecular Cell, vol.37, issue.5, pp.679-689, 2010.
DOI : 10.1016/j.molcel.2010.01.012

S. Grosswendt, A. Filipchyk, M. Manzano, F. Klironomos, and M. Schilling, Unambiguous Identification of miRNA:Target Site Interactions by Different Types of Ligation Reactions, Molecular Cell, vol.54, issue.6, pp.1042-1054
DOI : 10.1016/j.molcel.2014.03.049

Y. Hu, C. Roesel, I. Flockhart, L. Perkins, and N. Perrimon, UP-TORR: Online Tool for Accurate and Up-to-Date Annotation of RNAi Reagents, Genetics, vol.195, issue.1, pp.37-45, 2013.
DOI : 10.1534/genetics.113.151340

R. S. Kamath and J. Ahringer, Genome-wide RNAi screening in Caenorhabditis elegans, Methods, vol.30, issue.4, pp.313-321, 2003.
DOI : 10.1016/S1046-2023(03)00050-1

R. S. Kamath, A. G. Fraser, Y. Dong, G. Poulin, and R. Durbin, Systematic functional analysis of the Caenorhabditis elegans genome using RNAi, Nature, vol.421, issue.6920, pp.231-237, 2003.
DOI : 10.1038/nature01278

W. J. Kent, BLAT---The BLAST-Like Alignment Tool, Genome Research, vol.12, issue.4, pp.656-664, 2002.
DOI : 10.1101/gr.229202

J. Montojo, K. Zuberi, H. Rodriguez, F. Kazi, and G. Wright, GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop, Bioinformatics, vol.26, issue.22, pp.2927-2928, 2010.
DOI : 10.1093/bioinformatics/btq562

S. Parrish, J. Fleenor, S. Xu, C. Mello, and A. Fire, Functional Anatomy of a dsRNA Trigger, Molecular Cell, vol.6, issue.5, pp.1077-1087, 2000.
DOI : 10.1016/S1097-2765(00)00106-4

R. Pukkila-worley, R. L. Feinbaum, D. L. Mcewan, A. L. Conery, and F. M. , The Evolutionarily Conserved Mediator Subunit MDT-15/MED15 Links Protective Innate Immune Responses and Xenobiotic Detoxification, PLoS Pathogens, vol.29, issue.5, p.1004143, 2014.
DOI : 10.1371/journal.ppat.1004143.s009

W. Qu, C. Ren, Y. Li, J. Shi, and J. Zhang, Reliability analysis of the Ahringer Caenorhabditis elegans RNAi feeding library: a guide for genome-wide screens, BMC Genomics, vol.7, issue.5, p.170, 2011.
DOI : 10.1006/jmbi.2000.4042

J. Reboul, P. Vaglio, N. Tzellas, N. Thierry-mieg, and T. Moore, Openreading-frame sequence tags (OSTs) support the existence of at least 17,300 genes in C. elegans, Nature Genetics, vol.27, issue.3, pp.332-336, 2001.
DOI : 10.1038/85913

E. Rivals, L. Salmela, P. Kiiskinen, P. Kalsi, and J. Tarhio, mpscan: Fast Localisation of Multiple Reads in Genomes, Algorithms in Bioinformatics, vol.74, issue.7, pp.246-260, 2009.
DOI : 10.1016/j.jcss.2007.10.001
URL : https://hal.archives-ouvertes.fr/lirmm-00407173

S. H. Roy, D. V. Tobin, N. Memar, E. Beltz, and J. Holmen, 2014 A complex regulatory network coordinating cell cycles during C. elegans development is revealed by a genome-wide RNAi screen, Bethesda), vol.4, pp.3-795

J. F. Rual, J. Ceron, J. Koreth, T. Hao, and A. S. Nicot, Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based RNAi Library, Genome Research, vol.14, issue.10b, pp.2162-2168, 2004.
DOI : 10.1101/gr.2505604

J. F. Rual, N. Klitgord, and G. Achaz, Novel insights into RNAi off-target effects using C. elegans paralogs, BMC Genomics, vol.8, issue.1, p.106, 2007.
DOI : 10.1186/1471-2164-8-106

R. Saito, M. E. Smoot, K. Ono, J. Ruscheinski, and P. L. Wang, A travel guide to Cytoscape plugins, Nature Methods, vol.8, issue.11, pp.1069-1076
DOI : 10.1038/nbt.1567

P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, and J. T. Wang, Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks, Genome Research, vol.13, issue.11, pp.2498-2504, 2003.
DOI : 10.1101/gr.1239303

M. E. Smoot, K. Ono, J. Ruscheinski, P. L. Wang, and T. Ideker, Cytoscape 2.8: new features for data integration and network visualization, Bioinformatics, vol.27, issue.3, pp.431-432, 2011.
DOI : 10.1093/bioinformatics/btq675

L. Timmons and A. Fire, Specific interference by ingested dsRNA, Nature, vol.395, issue.6705, p.854, 1998.
DOI : 10.1038/27579

L. Timmons, D. L. Court, and A. Fire, Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans, Gene, vol.263, issue.1-2, pp.103-112, 2001.
DOI : 10.1016/S0378-1119(00)00579-5

K. Yook, T. W. Harris, T. Bieri, A. Cabunoc, and J. Chan, WormBase 2012: more genomes, more data, new website, Nucleic Acids Research, vol.40, issue.D1, pp.735-741, 2012.
DOI : 10.1093/nar/gkr954

X. Zhou, F. Xu, H. Mao, J. Ji, and M. Yin, Nuclear RNAi Contributes to the Silencing of Off-Target Genes and Repetitive Sequences in Caenorhabditis elegans, Genetics, vol.197, issue.1, pp.121-132
DOI : 10.1534/genetics.113.159780

O. Zugasti, N. Bose, B. Squiban, J. Belougne, and C. L. Kurz, Activation of a G protein???coupled receptor by its endogenous ligand triggers the innate immune response of Caenorhabditis elegans, Nature Immunology, vol.351, issue.9, pp.833-838, 2014.
DOI : 10.1021/ja210202y
URL : https://hal.archives-ouvertes.fr/hal-01134518