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Noncontiguous finished genome sequence and description of Prevotella phocaeensis sp. nov., a new anaerobic species isolated from human gut infected by Clostridium difficile.

P Afouda 1 S Ndongo 1 Saber Khelaifia 1, 2 Noemie Labas 1 Frederic Cadoret 2 Fabrizio Di Pinto 2, 3 Jeremy Delerce 1 Didier Raoult 1, 2 Matthieu Million 1, 2
1 URMITE - Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes
2 IHU AMU - Institut Hospitalier Universitaire Méditerranée Infection
3 APHM - Assistance Publique - Hôpitaux de Marseille
Abstract : Prevotella phocaeensis sp. nov. strain SN19(T) (= DSM 103364) is a new species isolated from the gut microbiota of patient with colitis due to Clostridium difficile. Strain SN19(T) is Gram-negative rod-shaped bacteria, strictly anaerobic, nonmotile and non-endospore forming. The predominance fatty acid is hexadecanoic acid. Its 16S rRNA showed a 97.70% sequence identity with its phylogenetically closest species, Prevotella oralis. The genome is 2 922 117 bp long and contains 2486 predicted genes including 56 RNA genes.
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https://hal-amu.archives-ouvertes.fr/hal-01474400
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Submitted on : Wednesday, February 22, 2017 - 5:19:04 PM
Last modification on : Wednesday, August 19, 2020 - 12:08:19 PM

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P Afouda, S Ndongo, Saber Khelaifia, Noemie Labas, Frederic Cadoret, et al.. Noncontiguous finished genome sequence and description of Prevotella phocaeensis sp. nov., a new anaerobic species isolated from human gut infected by Clostridium difficile. . New Microbes and New Infections, Wiley Online Library 2016, 15, pp.117-127. ⟨10.1016/j.nmni.2016.12.013⟩. ⟨hal-01474400⟩

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