V. Pagès and R. P. Fuchs, How DNA lesions are turned into mutations within cells? Oncogene, pp.8957-8966, 2002.

F. Prado, Homologous recombination maintenance of genome integrity during DNA damage tolerance, Molecular & Cellular Oncology, vol.124, issue.2, p.957039, 2014.
DOI : 10.1016/j.cell.2006.08.050

X. Xu, S. Blackwell, A. Lin, F. Li, Z. Qin et al., Error-free DNA-damage tolerance in Saccharomyces cerevisiae, Mutation Research/Reviews in Mutation Research, vol.764, pp.43-50, 2015.
DOI : 10.1016/j.mrrev.2015.02.001

L. Laureti, J. Demol, R. P. Fuchs, and V. Pagès, Bacterial Proliferation: Keep Dividing and Don't Mind the Gap, PLOS Genetics, vol.207, issue.12, 2015.
DOI : 10.1371/journal.pgen.1005757.s004

URL : https://hal.archives-ouvertes.fr/hal-01426227

A. Kuzminov, Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda, Microbiol. Mol. Biol. Rev, vol.63, pp.751-813, 1999.

S. C. Kowalczykowski, Initiation of genetic recombination and recombination-dependent replication, Trends in Biochemical Sciences, vol.25, issue.4, pp.156-165, 2000.
DOI : 10.1016/S0968-0004(00)01569-3

S. L. Lusetti and M. M. Cox, The Bacterial RecA Protein and the Recombinational DNA Repair of Stalled Replication Forks, Annual Review of Biochemistry, vol.71, issue.1, pp.71-100, 2002.
DOI : 10.1146/annurev.biochem.71.083101.133940

B. Michel, H. Boubakri, Z. Baharoglu, M. Lemasson, and R. Lestini, Recombination proteins and rescue of arrested replication forks, DNA Repair, vol.6, issue.7, pp.967-980, 2007.
DOI : 10.1016/j.dnarep.2007.02.016

URL : https://hal.archives-ouvertes.fr/hal-00167418

K. Morimatsu and S. C. Kowalczykowski, RecFOR Proteins Load RecA Protein onto Gapped DNA to Accelerate DNA Strand Exchange, Molecular Cell, vol.11, issue.5, pp.1337-1347, 2003.
DOI : 10.1016/S1097-2765(03)00188-6

URL : http://doi.org/10.1016/s1097-2765(03)00188-6

V. Pagès, Single-strand gap repair involves both RecF and RecBCD pathways, Current Genetics, vol.156, issue.3, 2016.
DOI : 10.1128/9781555817640.ch21

S. K. Amundsen, A. M. Neiman, S. M. Thibodeaux, and G. R. Smith, Genetic dissection of the biochemical activities of RecBCD enzyme, Genetics, vol.126, pp.25-40, 1990.

G. R. Smith, Conjugational recombination in E. coli: Myths and mechanisms, Cell, vol.64, issue.1, pp.19-27, 1991.
DOI : 10.1016/0092-8674(91)90205-D

M. Spies and S. C. Kowalczykowski, Homologous recombination by RecBCD and RecF pathways. Bacterial Chromosome, pp.389-403, 2005.
DOI : 10.1128/9781555817640.ch21

M. E. Fairman-williams, U. Guenther, and E. Jankowsky, SF1 and SF2 helicases: family matters, Current Opinion in Structural Biology, vol.20, issue.3, pp.313-324, 2010.
DOI : 10.1016/j.sbi.2010.03.011

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2916977

M. S. Dillingham, M. Spies, and S. C. Kowalczykowski, RecBCD enzyme is a bipolar DNA helicase, Nature, vol.423, issue.6942, pp.893-897, 2003.
DOI : 10.1038/nature01673

A. F. Taylor and G. R. Smith, RecBCD enzyme is a DNA helicase with fast and slow motors of opposite polarity, Nature, vol.423, issue.6942, pp.889-893, 2003.
DOI : 10.1038/nature01674

D. A. Arnold, P. R. Bianco, and S. C. Kowalczykowski, The Reduced Levels of ?? Recognition Exhibited by the RecBC1004D Enzyme Reflect Its Recombination Defect in Vivo, Journal of Biological Chemistry, vol.273, issue.26, pp.16476-16486, 1998.
DOI : 10.1074/jbc.273.26.16476

A. F. Taylor, S. K. Amundsen, M. Guttman, K. K. Lee, J. Luo et al., Control of RecBCD Enzyme Activity by DNA Binding- and Chi Hotspot-Dependent Conformational Changes, Journal of Molecular Biology, vol.426, issue.21, pp.3479-3499, 2014.
DOI : 10.1016/j.jmb.2014.07.017

S. K. Amundsen and G. R. Smith, Interchangeable Parts of the Escherichia coli Recombination Machinery, Cell, vol.112, issue.6, pp.741-744, 2003.
DOI : 10.1016/S0092-8674(03)00197-1

N. Handa, K. Morimatsu, S. T. Lovett, and S. C. Kowalczykowski, Reconstitution of initial steps of dsDNA break repair by the RecF pathway of E. coli, Genes & Development, vol.23, issue.10, pp.1234-1245, 2009.
DOI : 10.1101/gad.1780709

V. Pagès, G. Mazon, K. Naiman, G. Philippin, and R. P. Fuchs, Monitoring bypass of single replication-blocking lesions by damage avoidance in the Escherichia coli chromosome, Nucleic Acids Research, vol.40, issue.18, pp.9036-9043, 2012.
DOI : 10.1093/nar/gks675

E. Esnault, M. Valens, O. Espéli, and F. Boccard, Chromosome Structuring Limits Genome Plasticity in Escherichia coli, PLoS Genetics, vol.334, issue.12, p.226, 2007.
DOI : 10.1371/journal.pgen.0030226.st001

URL : http://doi.org/10.1371/journal.pgen.0030226

K. A. Datsenko and B. L. Wanner, One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products, Proceedings of the National Academy of Sciences, vol.27, issue.2, pp.6640-6645, 2000.
DOI : 10.1093/nar/27.2.389

M. E. Jockovich and R. S. Myers, Nuclease activity is essential for RecBCD recombination in Escherichia coli, Molecular Microbiology, vol.27, issue.4, pp.949-962, 2001.
DOI : 10.1046/j.1365-2958.2001.02573.x

D. S. Weiss, J. C. Chen, J. M. Ghigo, D. Boyd, and J. Beckwith, Localization of FtsI (PBP3) to the septal ring requires its membrane anchor, the Z ring, FtsA, FtsQ, and FtsL, J. Bacteriol, vol.181, pp.508-520, 1999.

M. Inuzuka, Plasmid-encoded initiation protein is required for activity at all three origins of plasmid R6K DNA replication in vitro, FEBS Letters, vol.34, issue.2, pp.236-240, 1985.
DOI : 10.1016/0014-5793(85)80266-0

C. E. Bauer, S. D. Hesse, R. I. Gumport, and J. F. Gardner, Mutational analysis of integrase arm-type binding sites of bacteriophage lambda, Journal of Molecular Biology, vol.192, issue.3, pp.513-527, 1986.
DOI : 10.1016/0022-2836(86)90273-1

P. Koehl, D. Burnouf, and R. P. Fuchs, Construction of plasmids containing a unique acetylaminofluorene adduct located within a mutation hot spot. A new probe for frameshift mutagenesis, 1989.

M. Yu, J. Souaya, and D. A. Julin, Identification of the nuclease active site in the multifunctional RecBCD enzyme by creation of a chimeric enzyme 1 1Edited by M. Gottesman, Journal of Molecular Biology, vol.283, issue.4, pp.797-808, 1998.
DOI : 10.1006/jmbi.1998.2127

I. Ivanci´civanci´c-ba´ceba´ce, P. Peharec, S. Moslavac, N. Skrobot, E. Salaj-smic et al., RecFOR function is required for DNA repair and recombination in a RecA loading-deficient recB mutant of Escherichia coli, Genetics, vol.163, pp.485-494, 2003.

S. K. Amundsen, A. F. Taylor, and G. R. Smith, The RecD subunit of the Escherichia coli RecBCD enzyme inhibits RecA loading, homologous recombination, and DNA repair, Proc. Natl, 2000.
DOI : 10.1016/0092-8674(91)90205-D

D. G. Anderson, J. J. Churchill, and S. C. Kowalczykowski, A Single Mutation, RecBD1080A, Eliminates RecA Protein Loading but Not Chi Recognition by RecBCD Enzyme, Journal of Biological Chemistry, vol.274, issue.38, pp.27139-27144, 1999.
DOI : 10.1074/jbc.274.38.27139

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=

A. Sakai and M. M. Cox, RecFOR and RecOR as Distinct RecA Loading Pathways, Journal of Biological Chemistry, vol.284, issue.5, pp.3264-3272, 2009.
DOI : 10.1074/jbc.M807220200

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631980

N. Handa and S. C. Kowalczykowski, A RecA Mutant, RecA730, Suppresses the Recombination Deficiency of the RecBC1004D?????* Interaction in Vitro and in Vivo, Journal of Molecular Biology, vol.365, issue.5, 2007.
DOI : 10.1016/j.jmb.2006.10.090

S. K. Amundsen, A. F. Taylor, A. M. Chaudhury, and G. R. Smith, recD: the gene for an essential third subunit of exonuclease V., Proceedings of the National Academy of Sciences, vol.83, issue.15, pp.5558-5562, 1986.
DOI : 10.1073/pnas.83.15.5558

P. R. Bianco and S. C. Kowalczykowski, Translocation step size and mechanism of the RecBC DNA helicase, Nature, vol.405, pp.368-372, 2000.

J. J. Churchill, D. G. Anderson, and S. C. Kowalczykowski, The RecBC enzyme loads RecA protein onto ssDNA asymmetrically and independently of chi , resulting in constitutive recombination activation, Genes & Development, vol.13, issue.7, pp.901-911, 1999.
DOI : 10.1101/gad.13.7.901

P. E. Lavery and S. C. Kowalczykowski, Biochemical basis of the constitutive repressor cleavage activity of RecA730 protein. A comparison to RecA441 and RecA803 proteins, J. Biol. Chem, vol.267, pp.20648-20658, 1992.

T. C. Wang, H. Y. Chang, and J. L. Hung, Cosuppression of recF, recR and recO mutations by mutant recA alleles in Escherichia coli cells, Mutation Research/DNA Repair, vol.294, issue.2, pp.157-166, 1993.
DOI : 10.1016/0921-8777(93)90024-B

K. Naiman, V. Pagès, R. P. Fuchs, R. Janel-bintz, J. Wagner et al., A defect in homologous recombination leads to increased translesion synthesis in E. coli All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis, Nucleic Acids Res. EMBO J, vol.19, pp.6259-6265, 2000.
URL : https://hal.archives-ouvertes.fr/hal-01446622

X. Shen, J. M. Sayer, H. Kroth, I. Ponten, M. Donnell et al., Efficiency and Accuracy of SOS-induced DNA Polymerases Replicating Benzo[a]pyrene-7,8-diol 9,10-Epoxide A and G Adducts, Journal of Biological Chemistry, vol.277, issue.7, pp.5265-5274, 2002.
DOI : 10.1074/jbc.M109575200

K. Y. Seo, A. Nagalingam, S. Miri, J. Yin, S. Chandani et al., Mirror image stereoisomers of the major benzo[a]pyrene N2-dG adduct are bypassed by different lesion-bypass DNA polymerases in E. coli, DNA Repair, vol.5, issue.4, pp.515-522, 2006.
DOI : 10.1016/j.dnarep.2005.12.009

J. Courcelle, B. M. Wendel, D. D. Livingstone, and C. T. Courcelle, RecBCD is required to complete chromosomal replication: Implications for double-strand break frequencies and repair mechanisms, DNA Repair, vol.32, pp.86-95, 2015.
DOI : 10.1016/j.dnarep.2015.04.018

A. F. Taylor and G. R. Smith, Substrate specificity of the DNA unwinding activity of the RecBC enzyme of Escherichia coli, Journal of Molecular Biology, vol.185, issue.2, pp.431-443, 1985.
DOI : 10.1016/0022-2836(85)90414-0

T. C. Wang and K. C. Smith, Mechanisms for recF-dependent and recB-dependent pathways of postreplication repair in UV-irradiated Escherichia coli uvrB, J. Bacteriol, vol.156, pp.1093-1098, 1983.

K. Naiman, G. Philippin, R. P. Fuchs, and V. Pagès, Chronology in lesion tolerance gives priority to genetic variability, Proceedings of the National Academy of Sciences, vol.239, issue.1-2, pp.5526-5531, 2014.
DOI : 10.1073/pnas.120163297

URL : https://hal.archives-ouvertes.fr/hal-01446624

K. Schlacher, N. Christ, N. Siaud, A. Egashira, H. Wu et al., Double-Strand Break Repair-Independent Role for BRCA2 in Blocking Stalled Replication Fork Degradation by MRE11, Cell, vol.145, issue.4, pp.529-542, 2011.
DOI : 10.1016/j.cell.2011.03.041

A. Fradet-turcotte, J. Sitz, D. Grapton, and A. Orthwein, BRCA2 functions: from DNA repair to replication fork stabilization, Endocrine-Related Cancer, vol.23, issue.10, pp.10-1530, 2016.
DOI : 10.1530/ERC-16-0297

S. Ying, F. C. Hamdy, and T. Helleday, Mre11-Dependent Degradation of Stalled DNA Replication Forks Is Prevented by BRCA2 and PARP1, Cancer Research, vol.72, issue.11, pp.2814-2821, 2012.
DOI : 10.1158/0008-5472.CAN-11-3417