The segment polarity network is a robust developmental module, Nature, vol.406, issue.6792, p.10910359, 2000. ,
Dynamical modeling of syncytial mitotic cycles in Drosophila embryos, Mol Syst Biol, vol.3, issue.1, p.131, 2007. ,
Dynamics and mechanical stability of the developing dorsoventral organizer of the wing imaginal disc, PLoS Comput Biol, vol.7, issue.9, p.21980267, 2011. ,
Drosophila blastoderm patterning, Curr Opin Genet Dev, vol.22, issue.6, p.23290311, 2012. ,
The formation of sense organs inDrosophila: A logical approach, BioEssays, vol.25, issue.8, p.12879451, 2003. ,
The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster, J Theor Biol, vol.223, issue.1, p.12782112, 2003. ,
Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc, Bioinformatics, vol.24, issue.16, 2008. ,
Segmenting the fly embryo: logical analysis of the role of the segment polarity cross-regulatory module, Int J Dev Biol, vol.52, issue.8, pp.1059-75, 2008. ,
Logical analysis of the budding yeast cell cycle, J Theor Biol, vol.257, issue.4, p.19185585, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00554556
Logical modelling of cell cycle control in eukaryotes: a comparative study, Mol Biosyst, vol.5, issue.12, pp.1569-81, 2009. ,
Mathematical modelling of cell-fate decision in response to death receptor engagement, PLoS Comput Biol, vol.6, issue.3, p.20221256, 2010. ,
URL : https://hal.archives-ouvertes.fr/inserm-00704979
Logic-based models for the analysis of cell signaling networks, Biochemistry, vol.49, issue.15, pp.3216-3240, 2010. ,
Comparing signaling networks between normal and transformed hepatocytes using discrete logical models. Cancer Res, vol.71, pp.5400-5411, 2011. ,
An integrative model links multiple inputs and signaling pathways to the onset of DNA synthesis in hepatocytes, FEBS J, vol.279, issue.18, p.22443451, 2012. ,
Implicit methods for qualitative modeling of gene regulatory networks, Methods Mol Biol, vol.786, pp.397-443, 2012. ,
Gene regulatory network models for floral organ determination, Methods Mol Biol, vol.1110, pp.441-69, 2014. ,
A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle, PLoS Comput Biol, vol.11, issue.9, p.1004486, 2015. ,
Model checking to assess T-helper cell plasticity, Front Bioeng Biotechnol, vol.2, p.86, 2015. ,
dpp induces mesodermal gene expression in Drosophila, Nature, vol.372, issue.6508, p.7997266, 1994. ,
Ectopic decapentaplegic in the Drosophila midgut alters the expression of five homeotic genes, dpp, and wingless, causing specific morphological defects, Dev Biol, vol.164, issue.2, p.7913899, 1994. ,
Induction of visceral and cardiac mesoderm by ectodermal Dpp in the early Drosophila embryo, Nature, vol.374, issue.6521, p.7700357, 1995. ,
Smad proteins act in combination with synergistic and antagonistic regulators to target Dpp responses to the Drosophila mesoderm, Genes Dev, vol.12, issue.15, 1998. ,
TGF-beta family signal transduction in Drosophila development: from Mad to Smads, Dev Biol, vol.210, issue.2, p.10357889, 1999. ,
Nuclear integration of positive Dpp signals, antagonistic Wg inputs and mesodermal competence factors during Drosophila visceral mesoderm induction, Development, vol.132, issue.6, p.15750188, 2005. ,
Heart development in Drosophila requires the segment polarity gene wingless, Dev Biol, vol.169, issue.2, p.7781903, 1995. ,
Segmentation and specification of the Drosophila mesoderm, Genes Dev, vol.10, issue.24, p.8985186, 1996. ,
Cardiogenesis in the Drosophila model: control mechanisms during early induction and diversification of cardiac progenitors, Cold Spring Harb Symp Quant Biol, vol.67, p.12858517, 2002. ,
The serpent gene is necessary for progression through the early stages of fat-body development, Mech Dev, vol.60, issue.2, p.9025072, 1996. ,
The genetic control of the distinction between fat body and gonadal mesoderm in Drosophila, Development, vol.125, issue.4, p.9435291, 1998. ,
Hoshizaki DK. serpent, a GATA-like transcription factor gene, induces fat-cell development in Drosophila melanogaster, Development, vol.128, issue.7, p.11245585, 2001. ,
Control of cell fates and segmentation in the Drosophila mesoderm, Development, vol.124, issue.15, p.9247334, 1997. ,
Combinatorial binding predicts spatio-temporal cis-regulatory activity, Nature, vol.462, issue.7269, pp.65-70, 2009. ,
DOI : 10.1038/nature08531
Dynamic CRM occupancy reflects a temporal map of developmental progression, Mol Syst Biol, vol.6, issue.1, p.383, 2010. ,
A transcription factor collective defines cardiac cell fate and reflects lineage history, Cell, vol.148, issue.3, p.22304916, 2012. ,
DOI : 10.1016/j.cell.2012.01.030
URL : https://doi.org/10.1016/j.cell.2012.01.030
tinman and bagpipe: two homeo box genes that determine cell fates in the dorsal mesoderm of Drosophila, Genes Dev, vol.7, issue.7B, p.8101173, 1993. ,
The gene tinman is required for specification of the heart and visceral muscles in Drosophila, Development, vol.118, issue.3, p.7915669, 1993. ,
twist: a myogenic switch in Drosophila, Science, vol.272, issue.5267, p.8633240, 1996. ,
DOI : 10.1126/science.272.5267.1481
Notch signaling patterns Drosophila mesodermal segments by regulating the bHLH transcription factor twist, Development, vol.131, issue.10, p.15128668, 2004. ,
DOI : 10.1242/dev.01113
URL : http://dev.biologists.org/content/develop/131/10/2359.full.pdf
Regulation of the twist target gene tinman by modular cis-regulatory elements during early mesoderm development, Development, vol.124, issue.24, p.9362473, 1997. ,
D-MEF2: a MADS box transcription factor expressed in differentiating mesoderm and muscle cell lineages during Drosophila embryogenesis, Proc Natl Acad Sci USA, vol.91, issue.12, p.8202544, 1994. ,
DOI : 10.1073/pnas.91.12.5662
URL : http://www.pnas.org/content/91/12/5662.full.pdf
biniou (FoxF), a central component in a regulatory network controlling visceral mesoderm development and midgut morphogenesis in Drosophila, Genes Dev, vol.15, issue.21, p.11691840, 2001. ,
Temporal ChIP-onchip reveals Biniou as a universal regulator of the visceral muscle transcriptional network, Genes Dev, vol.21, p.17908931, 2007. ,
Intersecting signalling and transcriptional pathways in Drosophila heart specification, Semin Cell Dev Biol, vol.10, issue.1, p.10355030, 1999. ,
DOI : 10.1006/scdb.1998.0279
Wingless effects mesoderm patterning and ectoderm segmentation events via induction of its downstream target sloppy paired, Development, vol.127, issue.24, p.11076769, 2000. ,
The T-box-encoding Dorsocross genes function in amnioserosa development and the patterning of the dorsolateral germ band downstream of Dpp, Development, vol.130, issue.14, p.12783790, 2003. ,
The Dorsocross T-box genes are key components of the regulatory network controlling early cardiogenesis in Drosophila, Development, vol.132, issue.22, p.16221729, 2005. ,
A gene regulatory network controlling the embryonic specification of endoderm, Nature, vol.474, issue.7353, pp.635-644, 2011. ,
Predictive computation of genomic logic processing functions in embryonic development, Proc Natl Acad Sci USA, vol.109, issue.41, p.22927416, 2012. ,
DOI : 10.1073/pnas.1207852109
URL : http://www.pnas.org/content/109/41/16434.full.pdf
Logical modelling of Drosophila signalling pathways, Mol Biosyst, vol.9, issue.9, pp.2248-58, 2013. ,
DOI : 10.1039/c3mb70187e
URL : https://hal.archives-ouvertes.fr/hal-01596218
Dynamical behaviour of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state, Bull Math Biol, vol.57, issue.2, p.7703920, 1995. ,
Logical modelling of gene regulatory networks with GINsim, Methods Mol Biol, vol.804, pp.463-79, 2012. ,
DOI : 10.1007/978-1-61779-361-5_23
Dynamically consistent reduction of logical regulatory graphs, Theor Comput Sci, vol.412, pp.2207-2225, 2011. ,
DOI : 10.1016/j.tcs.2010.10.021
URL : https://hal.archives-ouvertes.fr/hal-01284743
Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity, PLoS Genet, vol.10, issue.1, p.1004060, 2014. ,