Expression and Mutational Analysis of DinB-Like Protein DR0053 in Deinococcus radiodurans, PLOS ONE, vol.1804, issue.2, p.118275, 2015. ,
DOI : 10.1371/journal.pone.0118275.s002
Fitting a mixture model by expectation maximization to discover motifs in biopolymers, Proceedings. International Conference on Intelligent Systems for Molecular Biology, pp.28-36, 1994. ,
Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons, Molecular & Cellular Proteomics, vol.174, issue.2, pp.415-426, 2010. ,
DOI : 10.1016/j.tibs.2009.05.004
URL : https://hal.archives-ouvertes.fr/hal-00581589
after irradiation-induced DNA damage, PROTEOMICS, vol.187, issue.23-24, pp.3457-3469, 2013. ,
DOI : 10.1128/JB.187.11.3693-3697.2005
Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response, Nucleic Acids Research, vol.160, issue.15, pp.6546-6557, 2011. ,
DOI : 10.1016/j.resmic.2009.08.012
Proteomic insights into the lifestyle of an environmentally relevant marine bacterium, The ISME Journal, vol.6, issue.1, pp.124-135, 2012. ,
DOI : 10.1002/pmic.200900120
through Early Secretome Profiling in Three Redox Conditions, Molecular & Cellular Proteomics, vol.56, issue.7, pp.1486-1498, 2010. ,
DOI : 10.1128/JB.188.10.3551-3571.2006
Bacterial and archaeal resistance to ionizing radiation, Journal of Physics: Conference Series, vol.261, p.12005, 2011. ,
DOI : 10.1088/1742-6596/261/1/012005
Deinococcus radiodurans ??? the consummate survivor, Nature Reviews Microbiology, vol.47, issue.11, pp.882-892, 2005. ,
DOI : 10.1007/s007920050121
Death by protein damage in irradiated cells, DNA Repair, vol.11, issue.1, pp.12-21, 2012. ,
DOI : 10.1016/j.dnarep.2011.10.024
Alliance of Proteomics and Genomics to Unravel the Specificities of Sahara Bacterium Deinococcus deserti, PLoS Genetics, vol.23, issue.3, p.1000434, 2009. ,
DOI : 10.1371/journal.pgen.1000434.s017
URL : https://hal.archives-ouvertes.fr/hal-00459812
RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti, Genome Biology and Evolution, vol.5, issue.4, pp.932-948, 2014. ,
DOI : 10.1186/1471-2180-5-17
PprA protein is involved in chromosome segregation via its physical and functional interaction with DNA gyrase in irradiated Deinococcus radiodurans bacteria, MSphere, vol.1, pp.36-51, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01412363
bacterium, Molecular Microbiology, vol.386, issue.5, pp.1069-1084, 2015. ,
DOI : 10.1016/j.jmb.2008.12.062
URL : https://hal.archives-ouvertes.fr/hal-01464823
The IrrE Protein of Deinococcus radiodurans R1 Is a Novel Regulator of recA Expression, Journal of Bacteriology, vol.184, issue.22, pp.6216-6224, 2002. ,
DOI : 10.1128/JB.184.22.6216-6224.2002
Metal preferences of zincbinding motif on metalloproteases, Journal of Amino Acids, p.574816, 2011. ,
Complex oligomeric structure of a truncated form of DdrA: A protein required for the extreme radiotolerance of Deinococcus, Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, vol.1784, issue.7-8, pp.1050-1058, 2008. ,
DOI : 10.1016/j.bbapap.2008.03.009
URL : https://hal.archives-ouvertes.fr/hal-00297143
Preserving Genome Integrity: The DdrA Protein of Deinococcus radiodurans R1, PLoS Biology, vol.286, issue.10, p.304, 2004. ,
DOI : 10.1371/journal.pbio.0020304.t002
Taking the Shortcut for High-Throughput Shotgun Proteomic Analysis of Bacteria, Methods in Molecular Biology, vol.1197, pp.275-285, 2014. ,
DOI : 10.1007/978-1-4939-1261-2_16
N-terminomics and proteogenomics, getting off to a good start, PROTEOMICS, vol.8, issue.23-24, pp.2637-2646, 2014. ,
DOI : 10.1002/pmic.200701191
Structural analysis of zinc substitutions in the active site of thermolysin, Protein Science, vol.26, issue.10, 1955. ,
DOI : 10.1002/pro.5560041001
Metal substitutions and inhibition of thermolysin: Spectra of the cobalt enzyme, Journal of Biological Chemistry, vol.249, pp.4601-4607, 1974. ,
PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans, Biochemical and Biophysical Research Communications, vol.306, issue.2, pp.354-360, 2003. ,
DOI : 10.1016/S0006-291X(03)00965-3
Detecting and minimizing zinc contamination in physiological solutions, BMC Physiology, issue.4, 2004. ,
PprA Contributes to Deinococcus radiodurans Resistance to Nalidixic Acid, Genome Maintenance after DNA Damage and Interacts with Deinococcal Topoisomerases, PLoS ONE, vol.12, issue.1, p.85288, 2014. ,
DOI : 10.1371/journal.pone.0085288.g005
Zinc Fingers as Biologic Redox Switches?, Antioxidants & Redox Signaling, vol.11, issue.5, pp.1015-1027, 2009. ,
DOI : 10.1089/ars.2008.2269
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation, Proceedings of the National Academy of Sciences USA, pp.4191-4196, 2003. ,
DOI : 10.1093/emboj/19.5.1119
DNA binding is essential for PprI function in response to radiation damage in Deinococcus radiodurans, DNA Repair, vol.11, issue.2, pp.139-145, 2012. ,
DOI : 10.1016/j.dnarep.2011.10.013
: IrrE is a metalloprotease that cleaves repressor protein DdrO, Molecular Microbiology, vol.9, issue.2, pp.434-449, 2014. ,
DOI : 10.1016/j.dnarep.2010.04.006
Comparative Genomics of Stress Response Systems in Deinococcus Bacteria, Bacterial Stress Responses, pp.445-457, 2010. ,
DOI : 10.1128/9781555816841.ch27
Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks, PLoS ONE, vol.46, issue.5, p.955, 2007. ,
DOI : 10.1371/journal.pone.0000955.s020
Zinc Coordination Environments in Proteins as Redox Sensors and Signal Transducers, Antioxidants & Redox Signaling, vol.8, issue.9-10, pp.1419-1441, 2006. ,
DOI : 10.1089/ars.2006.8.1419
Ulp1-SUMO Crystal Structure and Genetic Analysis Reveal Conserved Interactions and a Regulatory Element Essential for Cell Growth in Yeast, Molecular Cell, vol.5, issue.5, pp.865-876, 2000. ,
DOI : 10.1016/S1097-2765(00)80326-3
PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation, Molecular Microbiology, vol.286, issue.1, pp.278-285, 2004. ,
DOI : 10.1093/oxfordjournals.jbchem.a003066
The LexA Protein from Deinococcus radiodurans Is Not Involved in RecA Induction following gamma Irradiation, Journal of Bacteriology, vol.183, issue.23, pp.6951-6956, 2001. ,
DOI : 10.1128/JB.183.23.6951-6956.2001
The radiation responsive promoter of the Deinococcus radiodurans pprA gene, Gene, vol.363, pp.133-141, 2005. ,
DOI : 10.1016/j.gene.2005.07.035
DdrA, DdrD, and PprA: Components of UV and Mitomycin C Resistance in Deinococcus radiodurans R1, PLoS ONE, vol.93, issue.7, p.69007, 2013. ,
DOI : 10.1371/journal.pone.0069007.g008
LexA Analog (dra0074) Is a Regulatory Protein That Is Irrelevant to recA Induction, Journal of Biochemistry, vol.136, issue.6, pp.787-793, 2004. ,
DOI : 10.1093/jb/mvh188
Oxidative Stress Resistance in Deinococcus radiodurans, Microbiology and Molecular Biology Reviews, vol.75, issue.1, pp.133-191, 2011. ,
DOI : 10.1128/MMBR.00015-10
Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation and Desiccation Reveals Novel Proteins That Contribute to Extreme Radioresistance, Genetics, vol.168, issue.1, pp.21-33, 2004. ,
DOI : 10.1534/genetics.104.029249
MicroScope???an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data, Nucleic Acids Research, vol.176, issue.D1, pp.636-647, 2013. ,
DOI : 10.1128/jb.176.17.5483-5493.1994
Crystal Structure of the IrrE Protein, a Central Regulator of DNA Damage Repair in Deinococcaceae, Journal of Molecular Biology, vol.386, issue.3, pp.704-716, 2009. ,
DOI : 10.1016/j.jmb.2008.12.062
URL : https://hal.archives-ouvertes.fr/hal-00532606
ZntR-mediated transcription of zntA responds to nanomolar intracellular free zinc, Journal of Inorganic Biochemistry, vol.111, pp.173-181, 2012. ,
DOI : 10.1016/j.jinorgbio.2012.02.008
Protease Activity of PprI Facilitates DNA Damage Response: Mn(2+)-Dependence and Substrate Sequence-Specificity of the Proteolytic Reaction, PLOS ONE, vol.288, issue.9, p.122071, 2015. ,
DOI : 10.1371/journal.pone.0122071.s011