G. Stanek, G. Wormser, J. Gray, and F. Strle, Lyme borreliosis, The Lancet, vol.379, issue.9814, pp.461-473, 2012.
DOI : 10.1016/S0140-6736(11)60103-7

S. Cutler, E. Ruzic-sabljic, and A. Potkonjak, Emerging borreliae ??? Expanding beyond Lyme borreliosis, Molecular and Cellular Probes, vol.31, pp.22-27, 2016.
DOI : 10.1016/j.mcp.2016.08.003

URL : http://roar.uel.ac.uk/5199/1/RBG_Emerging%20borreliosis%20for%20submissionmodHPFAug10_corrected%20without%20track%20change%20SJC.pdf

E. Ferquel, M. Garnier, M. J. Bernede-bauduin, C. Baranton, G. Perez-eid et al., Prevalence of Borrelia burgdorferi Sensu Lato and Anaplasmataceae Members in Ixodes ricinus Ticks in Alsace, a Focus of Lyme Borreliosis Endemicity in France, Applied and Environmental Microbiology, vol.72, issue.4, pp.3074-3078, 2006.
DOI : 10.1128/AEM.72.4.3074-3078.2006

A. Yssouf, L. Almeras, D. Raoult, and P. Parola, Emerging tools for identification of arthropod vectors, Future Microbiology, vol.78, issue.3, pp.549-566, 2016.
DOI : 10.1371/journal.pntd.0003473

URL : https://hal.archives-ouvertes.fr/hal-01459766

A. Karger, H. Kampen, B. Bettin, H. Dautel, M. Ziller et al., Species determination and characterization of developmental stages of ticks by whole-animal matrix-assisted laser desorption/ionization mass spectrometry, Ticks and Tick-borne Diseases, vol.3, issue.2, pp.78-89, 2012.
DOI : 10.1016/j.ttbdis.2011.11.002

A. Yssouf, C. Flaudrops, R. Drali, T. Kernif, C. Socolovschi et al., Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Rapid Identification of Tick Vectors, Journal of Clinical Microbiology, vol.51, issue.2, pp.522-530, 2013.
DOI : 10.1128/JCM.02665-12

B. Kumsa, M. Laroche, L. Almeras, O. Mediannikov, D. Raoult et al., Morphological, molecular and MALDI-TOF mass spectrometry identification of ixodid tick species collected in Oromia, Ethiopia, Parasitology Research, vol.37, issue.11, pp.4199-4210, 2016.
DOI : 10.1016/j.cimid.2014.05.002

URL : https://hal.archives-ouvertes.fr/hal-01455808

A. Croxatto, G. Prod-'hom, and G. Greub, Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology, FEMS Microbiology Reviews, vol.36, issue.2, pp.380-407, 2012.
DOI : 10.1128/JCM.02321-10

P. Seng, M. Drancourt, F. Gouriet, B. Scola, P. Fournier et al., Ongoing Revolution in Bacteriology: Routine Identification of Bacteria by Matrix???Assisted Laser Desorption Ionization Time???of???Flight Mass Spectrometry, Clinical Infectious Diseases, vol.49, issue.4, pp.543-551, 2009.
DOI : 10.1086/600885

F. Fotso, A. Mediannikov, O. Diatta, G. Almeras, L. Flaudrops et al., MALDI-TOF Mass Spectrometry Detection of Pathogens in Vectors: The Borrelia crocidurae/Ornithodoros sonrai Paradigm, PLoS Neglected Tropical Diseases, vol.34, issue.7, pp.2984-25058611, 2014.
DOI : 10.1371/journal.pntd.0002984.s001

A. Yssouf, L. Almeras, J. Terras, C. Socolovschi, D. Raoult et al., Detection of Rickettsia spp in Ticks by MALDI-TOF MS, PLOS Neglected Tropical Diseases, vol.7, issue.Suppl 2, pp.3473-25659152, 2015.
DOI : 10.1371/journal.pntd.0003473.s001

URL : https://hal.archives-ouvertes.fr/hal-01227937

A. Yssouf, L. Almeras, J. Berenger, M. Laroche, D. Raoult et al., Identification of tick species and disseminate pathogen using hemolymph by MALDI-TOF MS, Ticks and Tick-borne Diseases, vol.6, issue.5, pp.579-586, 2015.
DOI : 10.1016/j.ttbdis.2015.04.013

N. Tonetti, M. Voordouw, J. Durand, S. Monnier, and L. Gern, Genetic variation in transmission success of the Lyme borreliosis pathogen Borrelia afzelii, Ticks and Tick-borne Diseases, vol.6, issue.3, pp.334-343, 2015.
DOI : 10.1016/j.ttbdis.2015.02.007

C. Pérez-eid, Les tiques. Identification, biologie, importance médicale et vétérinaire. Lavoisier, 2007.

A. Kern, E. Collin, C. Barthel, C. Michel, B. Jaulhac et al., Tick Saliva Represses Innate Immunity and Cutaneous Inflammation in a Murine Model of Lyme Disease, Vector-Borne and Zoonotic Diseases, vol.11, issue.10, pp.1343-50, 2011.
DOI : 10.1089/vbz.2010.0197

M. Mbow, B. Rutti, and M. Brossard, Infiltration of CD4+ CD8+ T cells, and expression of ICAM-1, Ia antigens , IL-1 alpha and TNF-alpha in the skin lesion of BALB/c mice undergoing repeated infestations with nymphal Ixodes ricinus ticks, Immunology, vol.82, pp.596-602, 1994.

A. Kern, E. Collin, C. Barthel, C. Michel, B. Jaulhac et al., Tick Saliva Represses Innate Immunity and Cutaneous Inflammation in a Murine Model of Lyme Disease, Vector-Borne and Zoonotic Diseases, vol.11, issue.10, pp.1343-1350, 2011.
DOI : 10.1089/vbz.2010.0197

E. Guy and G. Stanek, Detection of Borrelia burgdorferi in patients with Lyme disease by the polymerase chain reaction., Journal of Clinical Pathology, vol.44, issue.7, pp.610-611, 1991.
DOI : 10.1136/jcp.44.7.610

S. Rijpkema, D. Golubi?, M. Molkenboer, N. Verbeek-de-kruif, and J. Schellekens, Identification of four genomic groups of Borrelia burgdorferi sensu lato in Ixodes ricinus ticks collected in a Lyme borreliosis endemic region of northern Croatia, Exp Appl Acarol, vol.20, pp.23-30, 1996.

O. Duron, V. Noël, K. Mccoy, M. Bonazzi, K. Sidi-boumedine et al., The Recent Evolution of a Maternally-Inherited Endosymbiont of Ticks Led to the Emergence of the Q Fever Pathogen, Coxiella burnetii, PLOS Pathogens, vol.23, issue.5, p.25978383, 2015.
DOI : 10.1371/journal.ppat.1004892.s001

URL : https://hal.archives-ouvertes.fr/hal-01250470

N. Hidri, O. Barraud, S. De-martino, F. Garnier, F. Paraf et al., Lyme endocarditis, Clinical Microbiology and Infection, vol.18, issue.12, pp.531-533, 2012.
DOI : 10.1111/1469-0691.12016

URL : https://doi.org/10.1111/1469-0691.12016

A. Nebbak, B. Hamzaoui, J. Berenger, I. Bitam, D. Raoult et al., Comparative analysis of storage conditions and homogenization methods for tick and flea species for identification by MALDI-TOF MS, Medical and Veterinary Entomology, vol.11, issue.4, p.28722283, 2017.
DOI : 10.2217/fmb.16.5

URL : https://hal.archives-ouvertes.fr/hal-01729760

A. Nebbak, A. Willcox, I. Bitam, D. Raoult, P. Parola et al., Standardization of sample homogenization for mosquito identification using an innovative proteomic tool based on protein profiling, PROTEOMICS, vol.16, issue.24, p.27862981, 2016.
DOI : 10.1046/j.1365-2915.2002.00393.x

URL : https://hal.archives-ouvertes.fr/hal-01453307

A. Diarra, L. Almeras, M. Laroche, J. Berenger, A. Koné et al., Molecular and MALDI-TOF identification of ticks and tick-associated bacteria in Mali, PLOS Neglected Tropical Diseases, vol.9, issue.3, p.28742123, 2017.
DOI : 10.1371/journal.pntd.0005762.s001

I. Lafri, L. Almeras, I. Bitam, A. Caputo, A. Yssouf et al., Identification of Algerian Field-Caught Phlebotomine Sand Fly Vectors by MALDI-TOF MS, PLOS Neglected Tropical Diseases, vol.8, issue.Suppl, pp.4351-26771833, 2016.
DOI : 10.1371/journal.pntd.0004351.s003

URL : https://hal.archives-ouvertes.fr/hal-01459966

G. Stanek, G. Wormser, J. Gray, and F. Strle, Lyme borreliosis, Lancet. Elsevier Ltd, vol.379, issue.11, pp.461-73, 2012.

J. Piesman, B. Schneider, and N. Zeidner, Use of Quantitative PCR To Measure Density of Borrelia burgdorferi in the Midgut and Salivary Glands of Feeding Tick Vectors, Journal of Clinical Microbiology, vol.39, issue.11, pp.4145-4148, 2001.
DOI : 10.1128/JCM.39.11.4145-4148.2001

S. Dunham-ems, M. Caimano, U. Pal, C. Wolgemuth, C. Eggers et al., Live imaging reveals a biphasic mode of dissemination of Borrelia burgdorferi within ticks, Journal of Clinical Investigation, vol.119, issue.12, pp.3652-3665, 2009.
DOI : 10.1172/JCI39401DS1

N. Rudenko, M. Golovchenko, M. Edwards, and L. Grubhoffer, Differential Expression of <I>Ixodes ricinus</I> Tick Genes Induced by Blood Feeding or <I>Borrelia burgdorferi</I> Infection, Journal of Medical Entomology, vol.42, issue.1, pp.36-41, 2005.
DOI : 10.1074/jbc.M001486200

N. Rudenko, M. Golovchenko, and L. Grubhoffer, Gene organization of a novel defensin of Ixodes ricinus: first annotation of an intron/exon structure in a hard tick defensin gene and first evidence of the occurrence of two isoforms of one member of the arthropod defensin family, Insect Molecular Biology, vol.205, issue.4, pp.501-507, 2007.
DOI : 10.1111/j.1365-2583.2005.00564.x

C. Dieme, A. Yssouf, A. Vega-rúa, J. Berenger, A. Failloux et al., Accurate identification of Culicidae at aquatic developmental stages by MALDI-TOF MS profiling, Parasites & Vectors, vol.11, issue.7, pp.544-25442218, 2014.
DOI : 10.1016/j.meegid.2011.08.013

URL : https://hal.archives-ouvertes.fr/pasteur-01680220

M. Jacquet, D. Genné, A. Belli, E. Maluenda, A. Sarr et al., The abundance of the Lyme disease pathogen Borrelia afzelii declines over time in the tick vector Ixodes ricinus, Parasites & Vectors, vol.51, issue.3, pp.257-28545520, 2017.
DOI : 10.1128/AEM.02158-13

L. Beati, P. Humair, A. Aeschlimann, and D. Raoult, Identification of Spotted Fever Group Rickettsiae Isolated from Dermacentor Marginatus and Ixodes Ricinus Ticks Collected in Switzerland, The American Journal of Tropical Medicine and Hygiene, vol.51, issue.2, pp.138-148, 1994.
DOI : 10.4269/ajtmh.1994.51.138

W. Van-treuren, L. Ponnusamy, R. Brinkerhoff, A. Gonzalez, C. Parobek et al., ABSTRACT, Applied and Environmental Microbiology, vol.81, issue.18, pp.6200-6209, 2015.
DOI : 10.1128/AEM.01562-15

K. Uhlmann, S. Gibb, S. Kalkhof, U. Arroyo-abad, C. Schulz et al., Species determination of Culicoides biting midges via peptide profiling using matrix-assisted laser desorption ionization mass spectrometry, Parasites & Vectors, vol.7, issue.1, pp.392-25152308, 2014.
DOI : 10.1017/S0007485308006391

O. Kahl, L. Gern, L. Eisen, and R. Lane, Ecological research on Borrelia burgdorferi sensu lato: terminology and some methodological pitfalls. Lyme borreliosis: biology, epidemiology and control. CABI; First edition, pp.29-46, 2002.
DOI : 10.1079/9780851996325.0029

P. Boyer, D. Martino, S. Hansmann, Y. Zilliox, L. Boulanger et al., No evidence of Borrelia mayonii in an endemic area for Lyme borreliosis in France, Parasites & Vectors, vol.5, issue.1, pp.282-28583197, 2017.
DOI : 10.1016/j.ttbdis.2016.02.012

A. Yssouf, P. Parola, A. Lindström, T. Lilja, L. Ambert et al., Identification of European mosquito species by MALDI-TOF MS, Parasitology Research, vol.77, issue.1, pp.2375-2378, 2014.
DOI : 10.1371/journal.pone.0072380

G. Schnell, A. Boeuf, B. Westermann, B. Jaulhac, D. Lipsker et al., to Investigate Lyme Disease, Molecular & Cellular Proteomics, vol.67, issue.5, pp.1254-1264, 2015.
DOI : 10.1016/S0923-2508(01)01186-X

G. Schnell, A. Boeuf, B. Westermann, B. Jaulhac, C. Carapito et al., to Investigate Lyme Disease, Molecular & Cellular Proteomics, vol.67, issue.5, pp.1254-64, 2015.
DOI : 10.1016/S0923-2508(01)01186-X