S. Altschul, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997.
DOI : 10.1093/nar/25.17.3389

S. An, S. Kim, J. Noh, and E. Yang, (Mediophyceae, Bacillariophyta), a clonal chain forming diatom in the west coast of Korea, Mitochondrial DNA Part A, vol.28, issue.1, pp.549-550, 2016.
DOI : 10.1093/gbe/evv147

S. An, J. Noh, D. Choi, J. Lee, and E. Yang, Repeat region absent in mitochondrial genome of tube-dwelling diatom Berkeleya fennica (Naviculales, Bacillariophyceae) Mitochondrial DNA Part A, pp.2137-2138, 2016.

G. Benson, Tandem repeats finder: a program to analyze DNA sequences, Nucleic Acids Research, vol.272, issue.5269, pp.573-580, 1999.
DOI : 10.1126/science.272.5269.1755

C. Chin, D. Alexander, P. Marks, A. Klammer, J. Drake et al., Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data, Nature Methods, vol.472, issue.6, pp.563-569, 2013.
DOI : 10.1016/S0076-6879(10)72001-2

D. Darriba, G. Taboada, R. Doallo, and D. Posada, ProtTest 3: fast selection of best-fit models of protein evolution, Bioinformatics, vol.36, issue.Suppl. 2, pp.1164-1165, 2011.
DOI : 10.1146/annurev.ecolsys.36.102003.152633

R. Edgar, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1797, 2004.
DOI : 10.1093/nar/gkh340

S. Guindon, F. Delsuc, J. Dufayard, and O. Gascuel, Estimating maximum likelihood phylogenies with PhyML Bioinformatics for DNA sequence analysis, pp.113-137, 2009.

A. Hauth, The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region, Nucleic Acids Research, vol.33, issue.14, pp.4433-4442, 2005.
DOI : 10.1093/nar/gki757

E. Kim, C. Lane, B. Curtis, C. Kozera, S. Bowman et al., Complete Sequence and Analysis of the Mitochondrial Genome of Hemiselmis andersenii CCMP644 (Cryptophyceae), BMC Genomics, vol.9, issue.1, p.215, 2008.
DOI : 10.1186/1471-2164-9-215

T. Lowe and S. Eddy, tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence, Nucleic Acids Research, vol.235, issue.4, pp.955-964, 1997.
DOI : 10.1006/jmbi.1994.1074

J. Lund, Studies on Asterionella: I. The Origin and Nature of the Cells Producing Seasonal Maxima, The Journal of Ecology, vol.37, issue.2, p.389, 1949.
DOI : 10.2307/2256614

K. Okonechnikov, O. Golosova, and M. Fursov, Unipro UGENE: a unified bioinformatics toolkit, Bioinformatics, vol.25, issue.Suppl. 12, pp.1166-1167, 2012.
DOI : 10.1093/bioinformatics/btp033

N. Ravin, Y. Galachyants, A. Mardanov, A. Beletsky, D. Petrova et al., Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes, Current Genetics, vol.31, issue.Suppl, pp.215-223, 2010.
DOI : 10.1080/0269249X.1996.9705372

M. Secq and B. Green, Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana, Gene, vol.476, issue.1-2, pp.20-26, 2011.
DOI : 10.1016/j.gene.2011.02.001

B. St?-over, TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses, BMC Bioinformatics, vol.11, issue.7, 2010.