D. Duh, V. Punda-polic, T. Avsic-zupanc, D. Bouyer, D. Walker et al., Rickettsia hoogstraalii sp. nov., isolated from hard- and soft-bodied ticks, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.45, issue.5, pp.977-984, 2010.
DOI : 10.1016/0923-2508(96)80284-1

D. Duh, . Punda-polic´vpolic´polic´v, T. Trilar, M. Petrovec, . Bradaric´nbradaric´bradaric´n et al., Molecular Identification of Rickettsia felis-like Bacteria in Haemaphysalis sulcata Ticks Collected from Domestic Animals in Southern Croatia, Annals of the New York Academy of Sciences, vol.8, issue.1, 2006.
DOI : 10.1016/j.vetpar.2004.09.024

J. Mattila, N. Burkhardt, H. Hutcheson, U. Munderloh, and T. Kurtti, Isolation of cell lines and a rickettsial endosymbiont from the soft tick Carios capensis (Acari: Argasidae: Ornithodorinae), J. Med. Entomol, vol.442, pp.1091-11010022, 2007.

M. Fukunaga and H. Watanabe, First detection of Rickettsia in softbodied ticks associated with seabirds, Japan. Microbiol. Immunol, vol.50, pp.403-406, 2006.

F. Márquez, Spotted fever group Rickettsia in ticks from southeastern Spain natural parks, Experimental and Applied Acarology, vol.5, issue.3-4, pp.185-194, 2008.
DOI : 10.3201/eid1201.050850

D. Chochlakis, I. Ioannou, V. Sandalakis, T. Dimitriou, N. Kassinis et al., Spotted Fever Group Rickettsiae in Ticks in Cyprus, Microbial Ecology, vol.31, issue.Suppl 2, pp.314-323, 2012.
DOI : 10.1007/BF00145672

V. Pader, B. Nikitorowicz, A. Abdissa, H. Adamu, T. Tolosa et al., Candidatus Rickettsia hoogstraalii in Ethiopian Argas persicus ticks, Ticks and Tick-borne Diseases, vol.3, issue.5-6, pp.338-345, 2012.
DOI : 10.1016/j.ttbdis.2012.10.021

O. Orkun, Z. Karaer, A. Cakmak, and S. Nalbantoglu, Spotted fever group rickettsiae in ticks in Turkey, Ticks and Tick-borne Diseases, vol.5, issue.2, pp.213-218, 2014.
DOI : 10.1016/j.ttbdis.2012.11.018

M. Dietrich, C. Lebarbenchon, A. Jaeger, R. Le, M. Bastien et al., Rickettsia spp. in seabird ticks from western Indian Ocean islands, Emerg. Infect. Dis, vol.20, pp.2011-2012838, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01285429

S. Nurk, A. Bankevich, D. Antipov, A. Gurevich, A. Korobeynikov et al., Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads, Research in computational molecular biology, pp.158-170, 2013.
DOI : 10.1007/978-3-642-37195-0_13

S. Bocs, S. Cruveiller, D. Vallenet, G. Nuel, and C. Médigue, AMIGene: Annotation of MIcrobial Genes, Nucleic Acids Research, vol.31, issue.13, pp.3723-3726, 2003.
DOI : 10.1093/nar/gkg590
URL : https://hal.archives-ouvertes.fr/hal-00271511

G. Blanc, H. Ogata, C. Robert, S. Audic, K. Suhre et al., Reductive Genome Evolution from the Mother of Rickettsia, PLoS Genetics, vol.44, issue.1, p.14, 2007.
DOI : 10.1371/journal.pgen.0030014.st005

M. Punta, P. Coggill, R. Eberhardt, J. Mistry, J. Tate et al., The Pfam protein families database, Nucleic Acids Research, vol.7, issue.9, pp.290-301, 2012.
DOI : 10.1371/journal.pbio.1000205
URL : https://hal.archives-ouvertes.fr/hal-01294685

S. Altschul, T. Madden, A. Schäffer, J. Zhang, Z. Zhang et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997.
DOI : 10.1093/nar/25.17.3389

T. Lowe and S. Eddy, tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence, Nucleic Acids Research, vol.235, issue.4, pp.955-964, 1997.
DOI : 10.1006/jmbi.1994.1074

K. Lagesen, P. Hallin, E. Rødland, H. Staerfeldt, T. Rognes et al., RNAmmer: consistent and rapid annotation of ribosomal RNA genes, Nucleic Acids Research, vol.22, issue.1, pp.3100-3108, 2007.
DOI : 10.1145/974614.974647

L. Li, C. Stoeckert, and D. Roos, OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes, Genome Research, vol.13, issue.9, pp.2178-2189, 2003.
DOI : 10.1101/gr.1224503