J. Aiken, N. J. Hardman-mountford, R. Barlow, J. Fishwick, T. Hirata et al., Functional links between bioenergetics and bio-optical traits of phytoplankton taxonomic groups: an overarching hypothesis with applications for ocean colour remote sensing, Journal of Plankton Research, vol.30, issue.2, pp.165-181, 2008.
DOI : 10.1093/plankt/fbm098

S. Alvain, C. Moulin, Y. Dandonneau, and F. M. Bréon, Remote sensing of phytoplankton groups in case 1 waters from global SeaWiFS imagery, Deep-Sea Res, Pt. I, vol.52, 1989.

S. Alvain, C. Moulin, Y. Dandonneau, and H. Loisel, Seasonal distribution and succession of dominant phytoplankton groups in the global ocean: A satellite view, Global Biogeochemical Cycles, vol.45, issue.98, pp.10-1029, 2008.
DOI : 10.1016/S0079-6611(00)00008-2
URL : https://hal.archives-ouvertes.fr/hal-00480911

S. Alvain, H. Loisel, and D. Dessailly, Theoretical analysis of ocean color radiances anomalies and implications for phytoplankton groups detection in case 1 waters, Optics Express, vol.20, issue.2, pp.1070-1083, 2012.
DOI : 10.1364/OE.20.001070
URL : https://hal.archives-ouvertes.fr/hal-00760876

S. Alvain, L. Quéré, C. Bopp, L. Racault, M. F. Beaugrand et al., Rapid climatic driven shifts of diatoms at high latitudes, Remote Sensing of Environment, vol.132, pp.195-201, 2013.
DOI : 10.1016/j.rse.2013.01.014
URL : https://hal.archives-ouvertes.fr/hal-00824425

B. Mustapha, Z. Alvain, S. Jamet, C. Loisel, H. Dessailly et al., Automatic classification of water-leaving radiance anomalies from global SeaWiFS imagery: Application to the detection of phytoplankton groups in open ocean waters, Remote Sensing of Environment, vol.146, pp.97-112, 2014.
DOI : 10.1016/j.rse.2013.08.046
URL : https://hal.archives-ouvertes.fr/hal-01009810

D. G. Boyce, M. R. Lewis, and B. Worm, Global phytoplankton decline over the past century, Nature, vol.104, issue.7306, pp.591-596, 2010.
DOI : 10.1029/2002GB001942

M. Thyssen, High-resolution analysis of a North Sea phytoplankton community structure Abundance of cryptophyceae and chlorophyll b-containing organisms in the Weddell-Scotia Confluence area in the spring of, Polar Biol, vol.12, pp.43-52, 1988.

P. H. Burkill, S. D. Archer, C. Robinson, P. D. Nightingale, S. B. Groom et al., Dimethyl sulphide biogeochemistry within a coccolithophore bloom (DISCO): an overview, Deep-Sea Res, pp.2863-2885, 2002.
DOI : 10.1016/s0967-0645(02)00061-9

A. Chase, E. Boss, R. Zaneveld, A. Bricaud, H. Claustre et al., Decomposition of in situ particulate absorption spectra, Methods in Oceanography, vol.7, pp.110-124, 2013.
DOI : 10.1016/j.mio.2014.02.002

S. W. Chisholm, R. J. Olson, Y. , and C. M. , Flow cytometry in oceanography: Status and prospects, Eos, Transactions American Geophysical Union, vol.21, issue.2, pp.562-572, 1988.
DOI : 10.4319/lo.1983.28.6.1275

A. Ciotti and A. Bricaud, Retrievals of a size parameter for phytoplankton and spectral light absorption by colored detrital matter from water-leaving radiances at SeaWiFS channels in a continental shelf region off Brazil, Limnology and Oceanography: Methods, vol.4, issue.7, pp.237-253, 2006.
DOI : 10.4319/lom.2006.4.237

H. Claustre, S. B. Hooker, L. Van-heukelem, J. Berthon, R. Barlow et al., An intercomparison of HPLC phytoplankton pigment methods using in situ samples: application to remote sensing and database activities, Marine Chemistry, vol.85, issue.1-2, pp.41-61, 2004.
DOI : 10.1016/j.marchem.2003.09.002

P. I. Colin, L. Quéré, C. Buitenhuis, E. House, J. Klaas et al., Biosphere dynamics: challenges for Earth system models, The State of the Planet: Frontiers and Challenges, pp.269-278, 2004.

C. De-boyer-montégut, G. Madec, A. S. Fischer, A. Lazar, and D. Iudicone, Mixed layer depth over the global ocean: An examination of profile data and a profile-based climatology, Journal of Geophysical Research, vol.32, issue.2, pp.10-1029, 2004.
DOI : 10.1007/978-3-662-03550-4

H. Demarcq, G. Reygondeau, S. Alvain, and V. Vantrepotte, Monitoring marine phytoplankton seasonality from space, Remote Sensing of Environment, vol.117, pp.211-222, 2011.
DOI : 10.1016/j.rse.2011.09.019
URL : https://hal.archives-ouvertes.fr/hal-00758085

J. D. Dodge, The early summer bloom of dinoflagellates in the North Sea, with special reference to 1971, Marine Biology, vol.244, issue.5, pp.327-336, 1977.
DOI : 10.1007/BF00395725

B. J. Dubelaar, P. Gerritzen, A. E. Beeker, R. Jonker, and K. Tangen, Design and first results of CytoBuoy: A wireless flow cytometer for in situ analysis of marine and fresh waters, Cytometry, vol.62, issue.4, pp.247-254, 1999.
DOI : 10.1117/12.199677

M. Dugenne, M. Thyssen, D. Nerini, C. Mante, J. Poggiale et al., Consequence of a sudden wind event on the dynamics of a coastal phytoplankton community: an insight into specific population growth rates using a single cell high frequency approach, Frontiers in Microbiology, vol.68, p.485, 2014.
DOI : 10.1046/j.1444-2906.2002.00433.x
URL : https://hal.archives-ouvertes.fr/hal-01146092

B. S. Everitt and T. Hothorn, A Handbook of Statistical Analyses Using R, p.276, 2006.
DOI : 10.1201/9781420010657

C. B. Field, M. J. Behrenfeld, J. T. Randerson, and P. G. Falkowski, Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components, Science, vol.281, issue.5374, pp.281-237, 1998.
DOI : 10.1126/science.281.5374.237

P. Foladori, A. Quaranta, and G. Ziglio, Use of silica microspheres having refractive index similar to bacteria for conversion of flow cytometric forward light scatter into biovolume, Water Research, vol.42, issue.14, pp.3757-3766, 2008.
DOI : 10.1016/j.watres.2008.06.026

I. Gailhard, P. Gros, J. P. Durbec, B. Beliaeff, C. Belin et al., Variability patterns of microphytoplankton communities along the French coasts, Marine Ecology Progress Series, vol.242, pp.39-50, 2002.
DOI : 10.3354/meps242039

F. Gomez and S. Souissi, Unusual diatoms linked to climatic events in the northeastern English Channel, Journal of Sea Research, vol.58, issue.4, pp.283-290, 2007.
DOI : 10.1016/j.seares.2007.08.002

N. Guiselin, Etude de la dynamique des communautés phytoplanctoniques par microscopie et cytométrie en flux, en eaux côtières de la Manche orientale, Côte d'Opale (ULCO), 2010.

T. Hirata, N. J. Hardman-mountford, R. J. Brewin, J. Aiken, R. Barlow et al., Synoptic relationships between surface Chlorophyll-a and diagnostic pigments specific to phytoplankton functional types, Biogeosciences, vol.85194, pp.311-32710, 2011.

P. M. Holligan, T. Aarup, and S. B. Groom, The North Sea: Satellite colour atlas, Continental Shelf Research, vol.9, issue.8, pp.667-765, 1989.
DOI : 10.1016/0278-4343(89)90096-4

S. D. Houghton, Coccolith sedimentation and transport in the North Sea, Marine Geology, vol.99, issue.1-2, pp.267-274, 1991.
DOI : 10.1016/0025-3227(91)90097-N

L. Kaufman and P. J. Rousseeuw, Finding Groups in Data: An Introduction to Cluster Analysis, Wiley Series in Probability and statistics, pp.10-1002, 1990.
DOI : 10.1002/9780470316801

T. S. Kostadinov, D. A. Siegel, and S. Maritorena, Retrieval of the particle size distribution from satellite ocean color observations, Journal of Geophysical Research, vol.13, issue.C9, pp.10-1029, 2009.
DOI : 10.1063/1.3060205

M. Kruskopf and K. J. Flynn, Chlorophyll content and fluorescence responses cannot be used to gauge reliably phytoplankton biomass, nutrient status or growth rate, New Phytologist, vol.39, issue.In press., pp.525-536, 2006.
DOI : 10.1016/j.jembe.2003.12.025
URL : http://onlinelibrary.wiley.com/doi/10.1111/j.1469-8137.2005.01601.x/pdf

L. Quéré, C. L. Harrison, S. P. , C. Prentice, I. Buitenhuis et al., Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry models, Global Change Biology, vol.1, issue.0, pp.2016-2040, 2005.
DOI : 10.1038/35088063

S. C. Leterme, L. Seuront, and M. Edwards, Differential contribution of diatoms and dinoflagellates to phytoplankton biomass in the NE Atlantic Ocean and the North Sea, Marine Ecology Progress Series, vol.312, pp.57-65, 2006.
DOI : 10.3354/meps312057

S. C. Leterme, R. D. Pingree, M. D. Skogen, L. Seuront, P. C. Reid et al., Decadal fluctuations in North Atlantinc water inflow in the North Sea between, pp.59-72, 1958.

W. K. Li, Primary production of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: Measurements from flow cytometric sorting, Limnology and Oceanography, vol.39, issue.1, pp.169-175, 1994.
DOI : 10.4319/lo.1994.39.1.0169

M. W. Lomas, N. Roberts, F. Lipschultz, J. W. Krause, D. M. Nelson et al., Biogeochemical responses to late-winter storms in the Sargasso Sea. IV. Rapid succession of major phytoplankton groups, Deep Sea Research Part I: Oceanographic Research Papers, vol.56, issue.6, pp.892-909, 2009.
DOI : 10.1016/j.dsr.2009.03.004

C. J. Lorenzen, A: method for the continuous measurement of in vivo chlorophyll concentration, Deep-Sea Res, Pt. I, vol.13, pp.223-227, 1966.

I. Marinov, S. C. Doney, and I. D. Lima, Response of ocean phytoplankton community structure to climate change over the 21st century: partitioning the effects of nutrients, temperature and light, Biogeosciences, vol.75194, pp.3941-395910, 2010.

I. Masotti, C. Moulin, S. Alvain, L. Bopp, A. Tagliabue et al., Large-scale shifts in phytoplankton groups in the Equatorial Pacific during ENSO cycles, Biogeosciences, vol.8, issue.3, pp.539-55010, 2011.
DOI : 10.5194/bg-8-539-2011-supplement
URL : https://hal.archives-ouvertes.fr/hal-00759100

C. R. Mendes, V. M. Tavano, M. C. Leal, M. S. Souza, V. Brotas et al., Shifts in the dominance between diatoms and cryptophytes during three late summers in the Bransfield Strait (Antarctic Peninsula), Polar Biology, vol.16, issue.4, pp.537-547, 2013.
DOI : 10.1017/S0954102004002238

T. A. Moisan, S. Sathyendranath, and H. A. Bouman, Ocean Color Remote Sensing of Phytoplankton Functional Types, 2012.

M. A. Moline, H. Claustre, T. K. Frazer, O. Schofield, and M. Vernet, Alteration of the food web along the Antarctic Peninsula in response to a regional warming trend, Global Change Biology, vol.214, issue.12, 1973.
DOI : 10.1016/S0967-0637(00)00032-7

G. Navarro, S. Alvain, V. Vantrepotte, and I. E. Huertas, Identification of dominant phytoplankton functional types in the Mediterranean Sea based on a regionalized remote sensing approach, Remote Sensing of Environment, vol.152, pp.557-575, 2014.
DOI : 10.1016/j.rse.2014.06.029
URL : https://hal.archives-ouvertes.fr/hal-01058157

A. Nair, S. Sathyendranath, T. Platt, J. Morales, V. Stuart et al., Remote sensing of phytoplankton functional types, Remote Sensing of Environment, vol.112, issue.8, pp.3366-3375, 2008.
DOI : 10.1016/j.rse.2008.01.021

T. G. Nielsen, B. Lokkegaard, K. Richardson, F. Pedersen, and L. Hansen, Structure of plankton communities in the Dogger Bank area (North Sea) during a stratified situation, Marine Ecology Progress Series, vol.95, pp.115-131, 1993.
DOI : 10.3354/meps095115

R. J. Olson, A. Shalapyonok, and H. M. Sosik, An automated flow cytometer for analyzing pico-and nanophytoplankton = FlowCytobot, Deep-Sea Res, Pt. I, vol.50, pp.301-315, 2003.
DOI : 10.1016/s0967-0637(03)00003-7

M. F. Racault, L. Quéré, C. Buitenhuis, E. Sathyendranath, S. Platt et al., Phytoplankton phenology in the global ocean, Ecological Indicators, vol.14, issue.1, pp.152-163, 2013.
DOI : 10.1016/j.ecolind.2011.07.010

V. Rousseau, M. Chrétiennot-dinet, A. Jacobsen, P. Verity, and S. Whipple, The life cycle of Phaeocystis: state of knowledge and presumptive role in ecology, Biogeochemistry, vol.35, issue.1, pp.29-47, 2007.
DOI : 10.1080/0028825X.1979.10425161

T. P. Rutten, B. Sandee, A. R. Hofman, S. Sathyendranath, W. Louisa et al., Phytoplankton monitoring by high performance flow cytometry: A successful approach?, Cytom. Part A, 64A Discrimination of diatoms from other phytoplankton using ocean-colour data, Mar. Ecol.-Prog. Ser, vol.272, pp.16-26, 2004.

J. Sharples, C. M. Moore, A. E. Hickman, P. M. Holligan, J. F. Tweddle et al., Internal tidal mixing as a control on continental margin ecosystems, Geophysical Research Letters, vol.49, issue.23, pp.2360310-1029, 2009.
DOI : 10.1007/978-1-4899-0762-2_12

H. M. Sosik, R. J. Olson, M. G. Neubert, and A. Shalapyonok, Growth rates of coastal phytoplankton from time-series measurements with a submersible flow cytometer, Limnology and Oceanography, vol.48, issue.5, pp.1756-1765, 2003.
DOI : 10.4319/lo.2003.48.5.1756

M. Thyssen, G. A. Tarran, M. V. Zubkov, R. J. Holland, G. Gregori et al., The emergence of automated high-frequency flow cytometry: revealing temporal and spatial phytoplankton variability, Journal of Plankton Research, vol.30, issue.3, pp.333-343, 2008.
DOI : 10.1093/plankt/fbn005
URL : https://hal.archives-ouvertes.fr/hal-00691254

M. Thyssen, D. Mathieu, N. Garcia, D. , and M. , Short-term variation of phytoplankton assemblages in Mediterranean coastal waters recorded with an automated submerged flow cytometer, Journal of Plankton Research, vol.28, issue.3, pp.1027-1040, 2008.
DOI : 10.1093/plankt/fbn005
URL : https://hal.archives-ouvertes.fr/hal-01663332

M. Thyssen, N. Garcia, D. , and M. , Sub meso scale phytoplankton distribution in the North East Atlantic surface waters determined with an automated flow cytometer, Biogeosciences, vol.6, issue.4, pp.569-58310, 2009.
DOI : 10.5194/bg-6-569-2009
URL : https://hal.archives-ouvertes.fr/hal-00330303

J. Uitz, H. Claustre, B. Gentili, and D. Stramski, Phytoplankton class-specific primary production in the world's oceans: Seasonal and interannual variability from satellite observations, Global Biogeochemical Cycles, vol.7, issue.1, pp.10-1029, 2010.
DOI : 10.1029/93GB02358

J. D. Van-bleijswijk, R. S. Kempers, M. J. Veldhuis, and P. Westbroek, CELL AND GROWTH CHARACTERISTICS OF TYPES A AND B OF EMILIANIA HUXLEYI (PRYMNESIOPHYCEAE) AS DETERMINED BY FLOW CYTOMETRY AND CHEMICAL ANALYSES1, Journal of Phycology, vol.30, issue.2, pp.230-241, 1994.
DOI : 10.1111/j.0022-3646.1994.00230.x

L. Van-heukelem and C. S. Thomas, Computer-assisted high-performance liquid chromatography method development with applications to the isolation and analysis of phytoplankton pigments, Journal of Chromatography A, vol.910, issue.1, pp.31-49, 2001.
DOI : 10.1016/S0378-4347(00)00603-4

V. Vantrepotte, H. Loisel, D. Dessailly, and X. Mariaux, Optical classification of contrasted coastal waters, Remote Sensing of Environment, vol.123, pp.306-323, 2012.
DOI : 10.1016/j.rse.2012.03.004
URL : https://hal.archives-ouvertes.fr/hal-00806881

M. Vargas, C. W. Brown, and M. R. Sapiano, Phenology of marine phytoplankton from satellite ocean color measurements, Geophysical Research Letters, vol.111, issue.15, pp.10-1029, 2009.
DOI : 10.4319/lo.2005.50.6.1820

M. J. Veldhuis and G. W. Kraay, Application of flow cytometry in marine phytoplankton research: current applications and future perspectives, Scientia Marina, vol.64, issue.2, pp.121-134, 2000.
DOI : 10.3989/scimar.2000.64n2121
URL : https://hal.archives-ouvertes.fr/hal-01663396

J. B. Waterbury, S. W. Watson, R. R. Guillard, and L. E. Brand, Widespread occurrence of a unicellular, marine, planktonic, cyanobacterium, Nature, vol.35, issue.5694, pp.293-294, 1979.
DOI : 10.1146/annurev.mi.31.100177.001301

P. J. Werdell, C. W. Proctor, E. Boss, T. Leeuw, and M. Ouhssain, Underway sampling of marine inherent optical properties on the Tara Oceans expedition as a novel resource for ocean color satellite data product validation, Methods in Oceanography, vol.7, pp.40-51, 2013.
DOI : 10.1016/j.mio.2013.09.001

C. E. Widdicombe, D. Eloire, D. Harbour, R. P. Harris, and P. J. Somerfield, Long-term phytoplankton community dynamics in the Western English Channel, Journal of Plankton Research, vol.276, issue.1656, pp.643-655, 2010.
DOI : 10.1098/rspb.2008.1200

K. H. Wiltshire and B. F. Manly, The warming trend at Helgoland Roads, North Sea: phytoplankton response, Helgoland Marine Research, vol.44, issue.4, pp.269-273, 2004.
DOI : 10.1007/s10152-004-0196-0

M. Thyssen, High-resolution analysis of a North Sea phytoplankton community structure: A method for the determination of phytoplankton chlorophyll and phaeophytin by fluorescence, Deep-Sea Res, pp.221-231, 1963.

M. V. Zubkov and P. H. Burkill, Syringe pumped high speed flow cytometry of oceanic phytoplankton, Cytometry Part A, vol.40, issue.9, pp.1010-1019, 2006.
DOI : 10.1002/0471722731

M. V. Zubkov and G. D. Quartly, Ultraplankton distribution in surface waters of the Mozambique Channel-flow cytometry and satellite imagery, Aquatic Microbial Ecology, vol.33, pp.155-161, 2003.
DOI : 10.3354/ame033155
URL : https://hal.archives-ouvertes.fr/hal-01651699