Viral Communities Associated with Human Pericardial Fluids in Idiopathic Pericarditis

Laura Fancello (1) , Sonia Monteil (1) , Nikolay Popgeorgiev (1) , Romain Rivet (1) , Frederique Gouriet (1) , Pierre-Edouard Fournier (1) , Didier Raoult (1) , Christelle Desnues (1)

1 URMITE - Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes

Pericarditis is a common human disease defined by inflammation of the pericardium. Currently, 40% to 85% of pericarditis cases have no identified etiology. Most of these cases are thought to be caused by an infection of undetected, unsuspected or unknown viruses. In this work, we used a culture-and sequence-independent approach to investigate the viral DNA communities present in human pericardial fluids. Seven viral metagenomes were generated from the pericardial fluid of patients affected by pericarditis of unknown etiology and one metagenome was generated from the pericardial fluid of a sudden infant death case. As a positive control we generated one metagenome from the pericardial fluid of a patient affected by pericarditis caused by herpesvirus type 3. Furthermore, we used as negative controls a total of 6 pericardial fluids from 6 different individuals affected by pericarditis of non-infectious origin: 5 of them were sequenced as a unique pool and the remaining one was sequenced separately. The results showed a significant presence of torque teno viruses especially in one patient, while herpesviruses and papillomaviruses were present in the positive control. Co-infections by different genotypes of the same viral type (torque teno viruses) or different viruses (herpesviruses and papillomaviruses) were observed. Sequences related to bacteriophages infecting Staphylococcus, Enterobacteria, Streptococcus, Burkholderia and Pseudomonas were also detected in three patients. This study detected torque teno viruses and papillomaviruses, for the first time, in human pericardial fluids.

Mots clés: Bacteriophages; Anelloviruses; Metagenomics; Human papillomavirus; Viral genomics; Genomic databases; Polymerase chain reaction; Sequence databases

Domaines: Maladies infectieuses; Cardiologie et système cardiovasculaire; Virologie

Laura Fancello, Sonia Monteil, Nikolay Popgeorgiev, Romain Rivet, Frederique Gouriet, et al.. Viral Communities Associated with Human Pericardial Fluids in Idiopathic Pericarditis. PLoS ONE, 2017, 9 (4), pp.93367-93367. ⟨10.1371/journal.pone.0093367⟩. ⟨hal-01772494⟩