Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection

Fatima Drissi (1) , Vicky Merhej (1) , Emmanouil Angelakis (1) , Abdessamad El Kaoutari (1) , Frédéric Carrière (2) , Bernard Henrissat (3) , Didier Raoult (1)

1 URMITE - Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes
2 EIPL - Enzymologie interfaciale et de physiologie de la lipolyse
3 AFMB - Architecture et fonction des macromolécules biologiques

BACKGROUND: Some Lactobacillus species are associated with obesity and weight gain while others are associated with weight loss. Lactobacillus spp. and bifidobacteria represent a major bacterial population of the small intestine where lipids and simple carbohydrates are absorbed, particularly in the duodenum and jejunum. The objective of this study was to identify Lactobacillus spp. proteins involved in carbohydrate and lipid metabolism associated with weight modifications. METHODS: We examined a total of 13 complete genomes belonging to seven different Lactobacillus spp. previously associated with weight gain or weight protection. We combined the data obtained from the Rapid Annotation using Subsystem Technology, Batch CD-Search and Gene Ontology to classify gene function in each genome. RESULTS: We observed major differences between the two groups of genomes. Weight gain-associated Lactobacillus spp. appear to lack enzymes involved in the catabolism of fructose, defense against oxidative stress and the synthesis of dextrin, L-rhamnose and acetate. Weight protection-associated Lactobacillus spp. encoded a significant gene amount of glucose permease. Regarding lipid metabolism, thiolases were only encoded in the genome of weight gain-associated Lactobacillus spp. In addition, we identified 18 different types of bacteriocins in the studied genomes, and weight gain-associated Lactobacillus spp. encoded more bacteriocins than weight protection-associated Lactobacillus spp. CONCLUSIONS: The results of this study revealed that weight protection-associated Lactobacillus spp. have developed defense mechanisms for enhanced glycolysis and defense against oxidative stress. Weight gain-associated Lactobacillus spp. possess a limited ability to breakdown fructose or glucose and might reduce ileal brake effects.

Mots clés: Metabolism; Comparative genomics; Obesity; Microbiota

Domaines: Alimentation et Nutrition

Fatima Drissi, Vicky Merhej, Emmanouil Angelakis, Abdessamad El Kaoutari, Frédéric Carrière, et al.. Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection. Nutrition & Diabetes, 2014, 4 (2), pp.e109 - e109. ⟨10.1038/nutd.2014.6⟩. ⟨hal-01787226⟩