J. Lagier, F. Armougom, M. Million, P. Hugon, I. Pagnier et al., Microbial culturomics: paradigm shift in the human gut microbiome study, Clinical Microbiology and Infection, vol.18, issue.12, pp.1185-93, 2012.
DOI : 10.1111/1469-0691.12023
URL : https://hal.archives-ouvertes.fr/hal-01478655

J. Lagier, P. Hugon, S. Khelaifia, P. Fournier, L. Scola et al., The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota, Clinical Microbiology Reviews, vol.28, issue.1, pp.237-64, 2015.
DOI : 10.1128/CMR.00014-14

P. Seng, C. Abat, J. Rolain, P. Colson, J. Lagier et al., Identification of Rare Pathogenic Bacteria in a Clinical Microbiology Laboratory: Impact of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry, Journal of Clinical Microbiology, vol.51, issue.7, pp.2182-94, 2013.
DOI : 10.1128/JCM.00492-13

D. Raoult and B. Henrissat, Are stool samples suitable for studying the link between gut microbiota and obesity?, European Journal of Epidemiology, vol.341, issue.6150, pp.307-316, 2014.
DOI : 10.1126/science.1241214

M. Drancourt, C. Bollet, A. Carlioz, R. Martelin, J. Gayral et al., 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates, J Clin Microbiol, vol.38, pp.3623-3653, 2000.

M. Kim, H. Oh, S. Park, and J. Chun, Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.328, issue.2, pp.346-51, 2014.
DOI : 10.1111/j.1574-6968.2011.02485.x
URL : http://ijs.microbiologyresearch.org/deliver/fulltext/ijsem/64/5/1825_ijs064931.pdf?itemId=/content/journal/ijsem/10.1099/ijs.0.064931-0&mimeType=pdf&isFastTrackArticle=

M. Collins, H. Shah, and T. Mitsuoka, Reclassification of Bacteroides microfusus (Kaneuchi and Mitsuoka) in a New Genus Rikenella, as Rikenella microfusus comb. nov., Systematic and Applied Microbiology, vol.6, issue.1, pp.79-81, 1985.
DOI : 10.1016/S0723-2020(85)80015-1

D. Huson, A. Auch, J. Qi, and S. Schuster, MEGAN analysis of metagenomic data, Genome Research, vol.17, issue.3, pp.377-86, 2007.
DOI : 10.1101/gr.5969107
URL : http://genome.cshlp.org/content/17/3/377.full.pdf

E. Stackebrandt, W. Frederiksen, G. Garrity, P. Grimont, P. Kämpfer et al., Report of the Ad Hoc Committee for the Reevaluation of the Species Definition in Bacteriology, Int J Syst Evol Microbiol, vol.52, pp.1043-1050, 2002.