Guanosine tetraphosphate modulates salicylic acid signalling and the resistance of Arabidopsis thaliana to Turnip mosaic virus. Molecular Plant Pathology, 2018. ,
DOI : 10.1111/mpp.12548
The RelA/SpoT Homolog (RSH) Superfamily: Distribution and Functional Evolution of ppGpp Synthetases and Hydrolases across the Tree of Life, PLoS ONE, vol.11, issue.8, 2011. ,
DOI : 10.1371/journal.pone.0023479.s006
Functional characterization of ObgC in ribosome biogenesis during chloroplast development, The Plant Journal, vol.106, issue.1, pp.122-134, 2012. ,
DOI : 10.1073/pnas.0907213106
URL : http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2012.04976.x/pdf
Acyl carrier protein/SpoT interaction, the switch linking SpoT-dependent stress response to fatty acid metabolism, Molecular Microbiology, vol.266, issue.4, pp.1048-1063, 2006. ,
DOI : 10.1128/JB.186.16.5249-5257.2004
URL : http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2006.05442.x/pdf
De novo transcriptome assembly of the mycoheterotrophic plant Monotropa hypopitys, Genomics Data, vol.11, pp.60-61, 2017. ,
DOI : 10.1016/j.gdata.2016.11.020
URL : https://doi.org/10.1016/j.gdata.2016.11.020
Chloroplast RNA polymerases: Role in chloroplast biogenesis, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.761-769, 2015. ,
DOI : 10.1016/j.bbabio.2015.02.004
High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation, The Plant Cell, vol.23, issue.3, pp.873-894, 2011. ,
DOI : 10.1105/tpc.111.083345
URL : http://www.plantcell.org/content/plantcell/23/3/873.full.pdf
Ribosome-dependent activation of stringent control, Nature, vol.98, issue.7606, pp.277-280, 2016. ,
DOI : 10.1073/pnas.181342398
URL : http://europepmc.org/articles/pmc4900451?pdf=render
Two Compounds implicated in the Function of the RC Gene of Escherichia coli, Nature, vol.51, issue.5183, pp.838-841, 1969. ,
DOI : 10.1016/0006-3002(60)90371-1
The control of ribonucleic acid synthesis in Escherichia coli. V. Characterization of a nucleotide associated with the stringent response, The Journal of biological chemistry, vol.245, pp.2309-2318, 1970. ,
Learning the Languages of the Chloroplast: Retrograde Signaling and Beyond, Annual Review of Plant Biology, vol.67, issue.1, pp.25-53, 2016. ,
DOI : 10.1146/annurev-arplant-043015-111854
AtObgC-AtRSH1 interaction may play a vital role in stress response signal transduction in Arabidopsis, Plant Physiology and Biochemistry, vol.74, pp.176-184, 2014. ,
DOI : 10.1016/j.plaphy.2013.10.022
Plastid sigma factors: Their individual functions and regulation in transcription, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.770-778, 2015. ,
DOI : 10.1016/j.bbabio.2015.01.001
URL : https://doi.org/10.1016/j.bbabio.2015.01.001
Algal models in plant biology, Journal of Experimental Botany, vol.329, issue.5994, pp.2425-2430, 2011. ,
DOI : 10.1126/science.1190791
URL : https://academic.oup.com/jxb/article-pdf/62/8/2425/1302384/err117.pdf
ppGpp: magic beyond RNA polymerase, Nature Reviews Microbiology, vol.71, issue.3, pp.203-212, 2012. ,
DOI : 10.1111/j.1365-2958.2008.06555.x
Opposite roles of the Arabidopsis cytokinin receptors AHK2 and AHK3 in the expression of plastid genes and genes for the plastid transcriptional machinery during senescence, Plant Molecular Biology, vol.54, issue.5847, pp.533-546, 2017. ,
DOI : 10.1093/pcp/pct049
Efficient high light acclimation involves rapid processes at multiple mechanistic levels, Journal of Experimental Botany, vol.584, issue.9, pp.2401-2414, 2015. ,
DOI : 10.1016/j.febslet.2010.07.024
URL : https://academic.oup.com/jxb/article-pdf/66/9/2401/18044934/eru505.pdf
The circadian regulation of photosynthesis, Photosynthesis Research, vol.96, issue.SI, pp.181-190, 2014. ,
DOI : 10.1073/pnas.96.16.9438
ABSTRACT, Eukaryotic Cell, vol.10, issue.7, pp.856-868, 2011. ,
DOI : 10.1128/EC.00326-10
Basal Levels of (p)ppGpp in Enterococcus faecalis: the Magic beyond the Stringent Response, mBio, vol.4, issue.5, pp.646-659, 2013. ,
DOI : 10.1128/mBio.00646-13
Two Small (p)ppGpp Synthases in Staphylococcus aureus Mediate Tolerance against Cell Envelope Stress Conditions, Journal of Bacteriology, vol.196, issue.4, pp.894-902, 2014. ,
DOI : 10.1128/JB.01201-13
URL : http://jb.asm.org/content/196/4/894.full.pdf
, Journal of Biological Chemistry, vol.110, issue.9, pp.7495-7504, 2004.
DOI : 10.1128/MMBR.65.1.44-79.2001
Helical repeats modular proteins are major players for organelle gene expression, Biochimie, vol.100, pp.141-150, 2014. ,
DOI : 10.1016/j.biochi.2013.08.031
URL : https://hal.archives-ouvertes.fr/hal-00965643
Recent functional insights into the role of (p)ppGpp in bacterial physiology, Nature Reviews Microbiology, vol.311, issue.5, pp.298-309, 2015. ,
DOI : 10.1126/science.1123061
CryptoDB: a Cryptosporidium bioinformatics resource update, Nucleic Acids Research, vol.34, issue.90001, pp.419-422, 2006. ,
DOI : 10.1093/nar/gkj078
ABSTRACT, mBio, vol.8, issue.4, pp.1047-1064, 2017. ,
DOI : 10.1128/mBio.01047-17
Calcium-dependent regulation of photosynthesis, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.993-1003, 2015. ,
DOI : 10.1016/j.bbabio.2015.02.010
Significance of accumulation of the alarmone (p)ppGpp in chloroplasts for controlling photosynthesis and metabolite balance during nitrogen starvation in Arabidopsis, Photosynthesis Research, vol.164, issue.1-3, 2018. ,
DOI : 10.1104/pp.113.229948
The stringent response regulates adaptation to darkness in the cyanobacterium Synechococcus elongatus, Proceedings of the National Academy of Sciences, pp.4867-4876, 2016. ,
Cytosolic ppGpp accumulation induces retarded plant growth and development, Plant Signaling & Behavior, vol.82, issue.2, 2016. ,
DOI : 10.1046/j.1365-313x.2000.00868.x
A highly sensitive quantification method for the accumulation of alarmone ppGpp in Arabidopsis thaliana using UPLC-ESI-qMS/MS, Journal of Plant Research, vol.5, issue.3, pp.511-518, 2015. ,
DOI : 10.3389/fpls.2014.00061
Phylogenetic analysis of proteins involved in the stringent response in plant cells, Journal of Plant Research, vol.26, issue.4, pp.625-634, 2017. ,
DOI : 10.1046/j.1365-2958.1997.5511919.x
Enzymatic and Molecular Characterization of Arabidopsis ppGpp Pyrophosphohydrolase, AtNUDX26, Bioscience, Biotechnology, and Biochemistry, vol.76, issue.12, pp.2236-2241, 2012. ,
DOI : 10.1074/jbc.273.44.28773
Function of a relaxed-like state following temperature downshifts in Escherichia coli., Journal of Bacteriology, vol.174, issue.12, pp.3903-3914, 1992. ,
DOI : 10.1128/jb.174.12.3903-3914.1992
A RelA-SpoT homolog (Cr-RSH) identified in Chlamydomonas reinhardtii generates stringent factor in vivo and localizes to chloroplasts in vitro, Nucleic Acids Research, vol.30, issue.22, pp.4985-4992, 2002. ,
DOI : 10.1093/nar/gkf628
Direct evidence for selective modulation of psbA, rpoA, rbcL and 16S RNA stability during barley chloroplast development, Plant Molecular Biology, vol.12, issue.3, pp.447-463, 1993. ,
DOI : 10.1038/newbio246040a0
Molecular characterization of a biotic and abiotic stress resistance-related gene RelA/SpoT homologue (PepRSH) from pepper, Plant Science, vol.176, issue.5, pp.635-642, 2009. ,
DOI : 10.1016/j.plantsci.2009.02.004
Changes in Chloroplast mRNA Stability during Leaf Development, THE PLANT CELL ONLINE, vol.3, issue.5, pp.517-529, 1991. ,
DOI : 10.1105/tpc.3.5.517
Novel connections in plant organellar signalling link different stress responses and signalling pathways, Journal of Experimental Botany, vol.4, issue.13, pp.3793-3807, 2016. ,
DOI : 10.1111/tpj.12382
An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation, The EMBO Journal, vol.223, issue.22, pp.4473-4483, 2004. ,
DOI : 10.1074/jbc.X200012200
Direct Regulation of GTP Homeostasis by (p)ppGpp: A Critical Component of Viability and Stress Resistance, Molecular Cell, vol.48, issue.2, pp.231-241, 2012. ,
DOI : 10.1016/j.molcel.2012.08.009
, , 2014.
, GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes, Journal of Bacteriology, vol.196, pp.189-201
Establishment of the chloroplast genetic system in rice during early leaf development and at low temperatures, Frontiers in Plant Science, vol.150, issue.61, p.386, 2014. ,
DOI : 10.1104/pp.109.136648
Organellar Gene Expression and Acclimation of Plants to Environmental Stress, Frontiers in Plant Science, vol.67, issue.e1002669, p.387, 2017. ,
DOI : 10.1093/jxb/erw106
Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?, Plant Molecular Biology, vol.35, issue.3-5, pp.235-249, 2011. ,
DOI : 10.1093/nar/gkl1067
URL : https://hal.archives-ouvertes.fr/hal-00586781
Regulatory Shifts in Plastid Transcription Play a Key Role in Morphological Conversions of Plastids during Plant Development, Frontiers in Plant Science, vol.109, issue.6386, 2017. ,
DOI : 10.1073/pnas.1119403109
URL : https://hal.archives-ouvertes.fr/hal-01513709
Chloroplast-specific in vivo Ca2+ imaging using Yellow Cameleon fluorescent protein sensors reveals organelle-autonomous Ca2+ signatures in the stroma, Plant Physiology, vol.171, pp.2317-2330, 2016. ,
DOI : 10.1104/pp.16.00652
Impact of the plastidial stringent response in plant growth and stress responses, Nature Plants, vol.244, issue.12, p.15167, 2015. ,
DOI : 10.1016/S0022-5320(69)90033-1
The Bacterial Stringent Response, Conserved in Chloroplasts, Controls Plant Fertilization, Plant and Cell Physiology, vol.266, issue.2, pp.135-141, 2008. ,
DOI : 10.1093/aob/mci083
Possible targets of ???magic spots??? in plant signalling, Plant Signaling & Behavior, vol.49, issue.11, pp.1021-1023, 2008. ,
DOI : 10.1093/pcp/pcm165
Differential regulation by ppGpp versus pppGpp in Escherichia coli, Nucleic Acids Research, vol.284, issue.12, pp.6175-6189, 2013. ,
DOI : 10.1093/nar/gkt302
URL : https://hal.archives-ouvertes.fr/pasteur-01427537
Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana, Planta, vol.266, issue.4, pp.553-562, 2008. ,
DOI : 10.1111/j.1469-8137.2007.02292.x
Chloroplast-mediated activation of plant immune signalling in Arabidopsis, Nature Communications, vol.25, issue.1, p.926, 2012. ,
DOI : 10.1046/j.0960-7412.2000.00942.x
Diversity in Guanosine 3???,5???-Bisdiphosphate (ppGpp) Sensitivity among Guanylate Kinases of Bacteria and Plants, Journal of Biological Chemistry, vol.268, issue.22, pp.15631-15641, 2014. ,
DOI : 10.1128/JB.02131-12
Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes, Current Biology, vol.18, issue.6, pp.410-418, 2008. ,
DOI : 10.1016/j.cub.2008.02.051
,
, Heterologous expression of a plant RelA-SpoT homologue results in increased stress tolerance in Saccharomyces cerevisiae by accumulation of the bacterial alarmone ppGpp, Microbiology, vol.158, pp.2213-2224
The binding of precursor proteins to chloroplasts requires nucleoside triphosphates in the intermembrane space, The Journal of Biological Chemistry, vol.267, pp.433-439, 1992. ,
Essential nucleoid proteins in early chloroplast development, Trends in Plant Science, vol.18, issue.4, pp.186-194, 2013. ,
DOI : 10.1016/j.tplants.2012.11.003
Plastid RNA polymerases: orchestration of enzymes with different evolutionary origins controls chloroplast biogenesis during the plant life cycle, Journal of Experimental Botany, vol.5, issue.22, pp.6957-6973, 2015. ,
DOI : 10.1111/j.1365-313X.2008.03766.x
A Novel Mechanism of Nuclear Photosynthesis Gene Regulation by Redox Signals from the Chloroplast during Photosystem Stoichiometry Adjustment, Journal of Biological Chemistry, vol.1402, issue.39, pp.36125-36130, 2001. ,
DOI : 10.1098/rstb.2000.0697
ppGpp is the major source of growth rate control in E. coli, Environmental Microbiology, vol.95, issue.3, pp.563-575, 2011. ,
DOI : 10.1073/pnas.95.6.2908
Redox Regulation of Thylakoid Protein Kinases and Photosynthetic Gene Expression, Antioxidants & Redox Signaling, vol.18, issue.16, pp.2184-2201, 2013. ,
DOI : 10.1089/ars.2012.5110
ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response, Molecular Cell, vol.62, issue.6, pp.811-823 ,
DOI : 10.1016/j.molcel.2016.04.029
The Magic Spot: A ppGpp Binding Site on E.??coli RNA Polymerase Responsible for Regulation of Transcription Initiation, Molecular Cell, vol.50, issue.3, pp.420-429, 2013. ,
DOI : 10.1016/j.molcel.2013.03.021
Stress-induced senescence and plant tolerance to abiotic stress, Journal of Experimental Botany, vol.116, issue.4, 2018. ,
DOI : 10.1093/aob/mcv037
Dark-Stimulated Calcium Ion Fluxes in the Chloroplast Stroma and Cytosol, THE PLANT CELL ONLINE, vol.14, issue.6, pp.1279-1291, 2002. ,
DOI : 10.1105/tpc.000653
Bacterial Alarmone, Guanosine 5???-Diphosphate 3???-Diphosphate (ppGpp), Predominantly Binds the ????? Subunit of Plastid-Encoded Plastid RNA Polymerase in Chloroplasts, ChemBioChem, vol.2, issue.7, pp.1227-1233, 2009. ,
DOI : 10.1093/oxfordjournals.pcp.a029456
, Bioscience, Biotechnology, and Biochemistry, vol.119, issue.1, pp.36-44, 2015.
DOI : 10.1093/jexbot/51.suppl_1.407
Organellar maturases: A window into the evolution of the spliceosome, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.798-808, 2015. ,
DOI : 10.1016/j.bbabio.2015.01.009
Chloroplasts at work during plant innate immunity, Journal of Experimental Botany, vol.6, issue.13, pp.3845-3854, 2016. ,
DOI : 10.4161/psb.5.4.10793
Changing the light environment: chloroplast signalling and response mechanisms, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.369, issue.1640, 2014. ,
DOI : 10.1098/rstb.2013.0244
URL : https://hal.archives-ouvertes.fr/hal-02051226
Plant organellar calcium signalling: an emerging field, Journal of Experimental Botany, vol.136, issue.4, pp.1525-1542, 2012. ,
DOI : 10.1104/pp.104.046367
The magic dance of the alarmones (p)ppGpp, Molecular Microbiology, vol.50, issue.4, pp.531-544, 2016. ,
DOI : 10.1016/j.molcel.2013.03.020
Chloroplast RNA Metabolism, Annual Review of Plant Biology, vol.61, issue.1, pp.125-155, 2010. ,
DOI : 10.1146/annurev-arplant-042809-112242
An Ancient Bacterial Signaling Pathway Regulates Chloroplast Function to Influence Growth and Development in Arabidopsis, The Plant Cell, vol.28, issue.3, pp.661-679, 2016. ,
DOI : 10.1105/tpc.16.00045
URL : https://hal.archives-ouvertes.fr/hal-01458177
A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses, Nature Structural & Molecular Biology, vol.172, issue.10, pp.1188-1194 ,
DOI : 10.1107/S0021889892009944
Translational regulation in chloroplasts for development and homeostasis, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.809-820, 2015. ,
DOI : 10.1016/j.bbabio.2015.05.008
Unique Architecture of the Plastid Ribosomal RNA Operon Promoter Recognized by the Multisubunit RNA Polymerase in Tobacco and Other Higher Plants, THE PLANT CELL ONLINE, vol.15, issue.1, pp.195-205, 2003. ,
DOI : 10.1105/tpc.007914
High diversity of plastidial promoters in Arabidopsis thaliana, Molecular Genetics and Genomics, vol.15, issue.6, pp.725-734, 2007. ,
DOI : 10.1007/978-3-540-48037-2_3
Identification of the bacterial alarmone guanosine 5'-diphosphate 3'-diphosphate (ppGpp) in plants, Proceedings of the National Academy of Sciences, vol.279, issue.9, pp.4320-4324, 2004. ,
DOI : 10.1074/jbc.M311573200
Structure and molecular characterization of barley nudix hydrolase genes, Bioscience, Biotechnology, and Biochemistry, vol.261, issue.3, pp.394-401, 2015. ,
DOI : 10.1093/nar/gki682
The Translational Apparatus of Plastids and Its Role in Plant Development, Molecular Plant, vol.7, issue.7, pp.1105-1120, 2014. ,
DOI : 10.1093/mp/ssu022
Calcium-activated (p)ppGpp Synthetase in Chloroplasts of Land Plants, Journal of Biological Chemistry, vol.7, issue.49, pp.35536-35545, 2007. ,
DOI : 10.1126/science.7569925
Arabidopsis RelA/SpoT homologs implicate (p)ppGpp in plant signaling, Proceedings of the National Academy of Sciences, pp.3747-3752, 2000. ,
DOI : 10.1093/emboj/18.13.3586
Response of RNA polymerase to ppGpp: requirement for the ?? subunit and relief of this requirement by DksA, Genes & Development, vol.19, issue.19, pp.2378-2387, 2005. ,
DOI : 10.1101/gad.1340305
Author response, eLife, vol.18, p.6974, 2015. ,
DOI : 10.7554/eLife.06974.033
The Escherichia coli GTPase CgtAE Cofractionates with the 50S Ribosomal Subunit and Interacts with SpoT, a ppGpp Synthetase/Hydrolase, Journal of Bacteriology, vol.186, issue.16, pp.5249-5257, 2004. ,
DOI : 10.1128/JB.186.16.5249-5257.2004
Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3???-5???-bisdiphosphate and activation by sigma factor 5, The Plant Journal, vol.168, issue.Suppl. 1, pp.1030-1041, 2015. ,
DOI : 10.1016/j.jplph.2011.01.009
, , 2013.
, Abscisic acid represses the transcription of chloroplast genes, Journal of Experimental Botany, vol.64, pp.4491-4502
Methyl jasmonate, gibberellic acid, and auxin affect transcription and transcript accumulation of chloroplast genes in barley, Journal of Plant Physiology, vol.168, issue.12, pp.1335-1344, 2011. ,
DOI : 10.1016/j.jplph.2011.01.009
Cytokinin Stimulates Chloroplast Transcription in Detached Barley Leaves, PLANT PHYSIOLOGY, vol.148, issue.2, pp.1082-1093, 2008. ,
DOI : 10.1104/pp.108.122275
The Mechanism of E.??coli RNA Polymerase Regulation by ppGpp Is Suggested by the Structure of their Complex, Molecular Cell, vol.50, issue.3, pp.430-436, 2013. ,
DOI : 10.1016/j.molcel.2013.03.020