H. Abdelkefi, M. Sugliani, and H. Ke, Guanosine tetraphosphate modulates salicylic acid signalling and the resistance of Arabidopsis thaliana to Turnip mosaic virus. Molecular Plant Pathology, 2018.
DOI : 10.1111/mpp.12548

G. Atkinson, T. Tenson, and V. Hauryliuk, The RelA/SpoT Homolog (RSH) Superfamily: Distribution and Functional Evolution of ppGpp Synthetases and Hydrolases across the Tree of Life, PLoS ONE, vol.11, issue.8, 2011.
DOI : 10.1371/journal.pone.0023479.s006

W. Bang, J. Chen, and I. Jeong, Functional characterization of ObgC in ribosome biogenesis during chloroplast development, The Plant Journal, vol.106, issue.1, pp.122-134, 2012.
DOI : 10.1073/pnas.0907213106

URL : http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2012.04976.x/pdf

A. Battesti and E. Bouveret, Acyl carrier protein/SpoT interaction, the switch linking SpoT-dependent stress response to fatty acid metabolism, Molecular Microbiology, vol.266, issue.4, pp.1048-1063, 2006.
DOI : 10.1128/JB.186.16.5249-5257.2004

URL : http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2006.05442.x/pdf

A. Beletsky, M. Filyushin, E. Gruzdev, A. Mazur, E. Prokhortchouk et al., De novo transcriptome assembly of the mycoheterotrophic plant Monotropa hypopitys, Genomics Data, vol.11, pp.60-61, 2017.
DOI : 10.1016/j.gdata.2016.11.020

URL : https://doi.org/10.1016/j.gdata.2016.11.020

T. Börner, A. Aleynikova, Y. Zubo, and V. Kusnetsov, Chloroplast RNA polymerases: Role in chloroplast biogenesis, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.761-769, 2015.
DOI : 10.1016/j.bbabio.2015.02.004

E. Breeze, E. Harrison, and S. Mchattie, High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation, The Plant Cell, vol.23, issue.3, pp.873-894, 2011.
DOI : 10.1105/tpc.111.083345

URL : http://www.plantcell.org/content/plantcell/23/3/873.full.pdf

A. Brown, I. Fernández, Y. Gordiyenko, and V. Ramakrishnan, Ribosome-dependent activation of stringent control, Nature, vol.98, issue.7606, pp.277-280, 2016.
DOI : 10.1073/pnas.181342398

URL : http://europepmc.org/articles/pmc4900451?pdf=render

M. Cashel and J. Gallant, Two Compounds implicated in the Function of the RC Gene of Escherichia coli, Nature, vol.51, issue.5183, pp.838-841, 1969.
DOI : 10.1016/0006-3002(60)90371-1

M. Cashel and B. Kalbacher, The control of ribonucleic acid synthesis in Escherichia coli. V. Characterization of a nucleotide associated with the stringent response, The Journal of biological chemistry, vol.245, pp.2309-2318, 1970.

K. Chan, S. Phua, P. Crisp, R. Mcquinn, and B. Pogson, Learning the Languages of the Chloroplast: Retrograde Signaling and Beyond, Annual Review of Plant Biology, vol.67, issue.1, pp.25-53, 2016.
DOI : 10.1146/annurev-arplant-043015-111854

J. Chen, W. Bang, and Y. Lee, AtObgC-AtRSH1 interaction may play a vital role in stress response signal transduction in Arabidopsis, Plant Physiology and Biochemistry, vol.74, pp.176-184, 2014.
DOI : 10.1016/j.plaphy.2013.10.022

W. Chi, B. He, J. Mao, J. Jiang, and L. Zhang, Plastid sigma factors: Their individual functions and regulation in transcription, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.770-778, 2015.
DOI : 10.1016/j.bbabio.2015.01.001

URL : https://doi.org/10.1016/j.bbabio.2015.01.001

J. Cock and S. Coelho, Algal models in plant biology, Journal of Experimental Botany, vol.329, issue.5994, pp.2425-2430, 2011.
DOI : 10.1126/science.1190791

URL : https://academic.oup.com/jxb/article-pdf/62/8/2425/1302384/err117.pdf

Z. Dalebroux and M. Swanson, ppGpp: magic beyond RNA polymerase, Nature Reviews Microbiology, vol.71, issue.3, pp.203-212, 2012.
DOI : 10.1111/j.1365-2958.2008.06555.x

M. Danilova, N. Kudryakova, A. Doroshenko, D. Zabrodin, Z. Rakhmankulova et al., Opposite roles of the Arabidopsis cytokinin receptors AHK2 and AHK3 in the expression of plastid genes and genes for the plastid transcriptional machinery during senescence, Plant Molecular Biology, vol.54, issue.5847, pp.533-546, 2017.
DOI : 10.1093/pcp/pct049

K. Dietz, Efficient high light acclimation involves rapid processes at multiple mechanistic levels, Journal of Experimental Botany, vol.584, issue.9, pp.2401-2414, 2015.
DOI : 10.1016/j.febslet.2010.07.024

URL : https://academic.oup.com/jxb/article-pdf/66/9/2401/18044934/eru505.pdf

A. Dodd, J. Kusakina, A. Hall, P. Gould, and M. Hanaoka, The circadian regulation of photosynthesis, Photosynthesis Research, vol.96, issue.SI, pp.181-190, 2014.
DOI : 10.1073/pnas.96.16.9438

R. Dorrell and A. Smith, ABSTRACT, Eukaryotic Cell, vol.10, issue.7, pp.856-868, 2011.
DOI : 10.1128/EC.00326-10

A. Gaca, J. Kajfasz, J. Miller, K. Liu, J. Wang et al., Basal Levels of (p)ppGpp in Enterococcus faecalis: the Magic beyond the Stringent Response, mBio, vol.4, issue.5, pp.646-659, 2013.
DOI : 10.1128/mBio.00646-13

T. Geiger, B. Kästle, F. Gratani, C. Goerke, and C. Wolz, Two Small (p)ppGpp Synthases in Staphylococcus aureus Mediate Tolerance against Cell Envelope Stress Conditions, Journal of Bacteriology, vol.196, issue.4, pp.894-902, 2014.
DOI : 10.1128/JB.01201-13

URL : http://jb.asm.org/content/196/4/894.full.pdf

R. Givens, M. Lin, D. Taylor, U. Mechold, J. Berry et al., Journal of Biological Chemistry, vol.110, issue.9, pp.7495-7504, 2004.
DOI : 10.1128/MMBR.65.1.44-79.2001

K. Hammani, G. Bonnard, A. Bouchoucha, A. Gobert, F. Pinker et al., Helical repeats modular proteins are major players for organelle gene expression, Biochimie, vol.100, pp.141-150, 2014.
DOI : 10.1016/j.biochi.2013.08.031

URL : https://hal.archives-ouvertes.fr/hal-00965643

V. Hauryliuk, G. Atkinson, K. Murakami, T. Tenson, and K. Gerdes, Recent functional insights into the role of (p)ppGpp in bacterial physiology, Nature Reviews Microbiology, vol.311, issue.5, pp.298-309, 2015.
DOI : 10.1126/science.1123061

M. Heiges, H. Wang, and E. Robinson, CryptoDB: a Cryptosporidium bioinformatics resource update, Nucleic Acids Research, vol.34, issue.90001, pp.419-422, 2006.
DOI : 10.1093/nar/gkj078

A. Hesketh, M. Vergnano, C. Wan, and S. Oliver, ABSTRACT, mBio, vol.8, issue.4, pp.1047-1064, 2017.
DOI : 10.1128/mBio.01047-17

A. Hochmal, S. Schulze, K. Trompelt, and M. Hippler, Calcium-dependent regulation of photosynthesis, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.993-1003, 2015.
DOI : 10.1016/j.bbabio.2015.02.010

R. Honoki, S. Ono, A. Oikawa, K. Saito, and S. Masuda, Significance of accumulation of the alarmone (p)ppGpp in chloroplasts for controlling photosynthesis and metabolite balance during nitrogen starvation in Arabidopsis, Photosynthesis Research, vol.164, issue.1-3, 2018.
DOI : 10.1104/pp.113.229948

R. Hood, S. Higgins, A. Flamholz, R. Nichols, and D. Savage, The stringent response regulates adaptation to darkness in the cyanobacterium Synechococcus elongatus, Proceedings of the National Academy of Sciences, pp.4867-4876, 2016.

Y. Ihara and S. Masuda, Cytosolic ppGpp accumulation induces retarded plant growth and development, Plant Signaling & Behavior, vol.82, issue.2, 2016.
DOI : 10.1046/j.1365-313x.2000.00868.x

Y. Ihara, H. Ohta, and S. Masuda, A highly sensitive quantification method for the accumulation of alarmone ppGpp in Arabidopsis thaliana using UPLC-ESI-qMS/MS, Journal of Plant Research, vol.5, issue.3, pp.511-518, 2015.
DOI : 10.3389/fpls.2014.00061

D. Ito, Y. Ihara, H. Nishihara, and S. Masuda, Phylogenetic analysis of proteins involved in the stringent response in plant cells, Journal of Plant Research, vol.26, issue.4, pp.625-634, 2017.
DOI : 10.1046/j.1365-2958.1997.5511919.x

D. Ito, T. Kato, T. Maruta, M. Tamoi, K. Yoshimura et al., Enzymatic and Molecular Characterization of Arabidopsis ppGpp Pyrophosphohydrolase, AtNUDX26, Bioscience, Biotechnology, and Biochemistry, vol.76, issue.12, pp.2236-2241, 2012.
DOI : 10.1074/jbc.273.44.28773

P. Jones, M. Cashel, G. Glaser, and F. Neidhardt, Function of a relaxed-like state following temperature downshifts in Escherichia coli., Journal of Bacteriology, vol.174, issue.12, pp.3903-3914, 1992.
DOI : 10.1128/jb.174.12.3903-3914.1992

K. Kasai, S. Usami, T. Yamada, Y. Endo, K. Ochi et al., A RelA-SpoT homolog (Cr-RSH) identified in Chlamydomonas reinhardtii generates stringent factor in vivo and localizes to chloroplasts in vitro, Nucleic Acids Research, vol.30, issue.22, pp.4985-4992, 2002.
DOI : 10.1093/nar/gkf628

M. Kim, D. Christopher, and J. Mullet, Direct evidence for selective modulation of psbA, rpoA, rbcL and 16S RNA stability during barley chloroplast development, Plant Molecular Biology, vol.12, issue.3, pp.447-463, 1993.
DOI : 10.1038/newbio246040a0

T. Kim, S. Ok, D. Kim, S. Suh, M. Byun et al., Molecular characterization of a biotic and abiotic stress resistance-related gene RelA/SpoT homologue (PepRSH) from pepper, Plant Science, vol.176, issue.5, pp.635-642, 2009.
DOI : 10.1016/j.plantsci.2009.02.004

P. Klaff and W. Gruissem, Changes in Chloroplast mRNA Stability during Leaf Development, THE PLANT CELL ONLINE, vol.3, issue.5, pp.517-529, 1991.
DOI : 10.1105/tpc.3.5.517

P. Kmiecik, M. Leonardelli, and M. Teige, Novel connections in plant organellar signalling link different stress responses and signalling pathways, Journal of Experimental Botany, vol.4, issue.13, pp.3793-3807, 2016.
DOI : 10.1111/tpj.12382

L. Krásný and R. Gourse, An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation, The EMBO Journal, vol.223, issue.22, pp.4473-4483, 2004.
DOI : 10.1074/jbc.X200012200

A. Kriel, A. Bittner, and S. Kim, Direct Regulation of GTP Homeostasis by (p)ppGpp: A Critical Component of Viability and Stress Resistance, Molecular Cell, vol.48, issue.2, pp.231-241, 2012.
DOI : 10.1016/j.molcel.2012.08.009

A. Kriel, S. Brinsmade, J. Tse, A. Tehranchi, A. Bittner et al., , 2014.

, GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes, Journal of Bacteriology, vol.196, pp.189-201

K. Kusumi and K. Iba, Establishment of the chloroplast genetic system in rice during early leaf development and at low temperatures, Frontiers in Plant Science, vol.150, issue.61, p.386, 2014.
DOI : 10.1104/pp.109.136648

D. Leister, L. Wang, and T. Kleine, Organellar Gene Expression and Acclimation of Plants to Environmental Stress, Frontiers in Plant Science, vol.67, issue.e1002669, p.387, 2017.
DOI : 10.1093/jxb/erw106

S. Lerbs-mache, Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?, Plant Molecular Biology, vol.35, issue.3-5, pp.235-249, 2011.
DOI : 10.1093/nar/gkl1067

URL : https://hal.archives-ouvertes.fr/hal-00586781

M. Liebers, B. Grübler, F. Chevalier, S. Lerbs-mache, L. Merendino et al., Regulatory Shifts in Plastid Transcription Play a Key Role in Morphological Conversions of Plastids during Plant Development, Frontiers in Plant Science, vol.109, issue.6386, 2017.
DOI : 10.1073/pnas.1119403109

URL : https://hal.archives-ouvertes.fr/hal-01513709

G. Loro, S. Wagner, F. Doccula, S. Behera, S. Weinl et al., Chloroplast-specific in vivo Ca2+ imaging using Yellow Cameleon fluorescent protein sensors reveals organelle-autonomous Ca2+ signatures in the stroma, Plant Physiology, vol.171, pp.2317-2330, 2016.
DOI : 10.1104/pp.16.00652

M. Maekawa, R. Honoki, Y. Ihara, R. Sato, A. Oikawa et al., Impact of the plastidial stringent response in plant growth and stress responses, Nature Plants, vol.244, issue.12, p.15167, 2015.
DOI : 10.1016/S0022-5320(69)90033-1

S. Masuda, K. Mizusawa, T. Narisawa, Y. Tozawa, H. Ohta et al., The Bacterial Stringent Response, Conserved in Chloroplasts, Controls Plant Fertilization, Plant and Cell Physiology, vol.266, issue.2, pp.135-141, 2008.
DOI : 10.1093/aob/mci083

S. Masuda, Y. Tozawa, and H. Ohta, Possible targets of ???magic spots??? in plant signalling, Plant Signaling & Behavior, vol.49, issue.11, pp.1021-1023, 2008.
DOI : 10.1093/pcp/pcm165

U. Mechold, K. Potrykus, H. Murphy, K. Murakami, and M. Cashel, Differential regulation by ppGpp versus pppGpp in Escherichia coli, Nucleic Acids Research, vol.284, issue.12, pp.6175-6189, 2013.
DOI : 10.1093/nar/gkt302

URL : https://hal.archives-ouvertes.fr/pasteur-01427537

K. Mizusawa, S. Masuda, and H. Ohta, Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana, Planta, vol.266, issue.4, pp.553-562, 2008.
DOI : 10.1111/j.1469-8137.2007.02292.x

H. Nomura, T. Komori, and S. Uemura, Chloroplast-mediated activation of plant immune signalling in Arabidopsis, Nature Communications, vol.25, issue.1, p.926, 2012.
DOI : 10.1046/j.0960-7412.2000.00942.x

Y. Nomura, A. Izumi, and Y. Fukunaga, Diversity in Guanosine 3???,5???-Bisdiphosphate (ppGpp) Sensitivity among Guanylate Kinases of Bacteria and Plants, Journal of Biological Chemistry, vol.268, issue.22, pp.15631-15641, 2014.
DOI : 10.1128/JB.02131-12

E. Nowack, M. Melkonian, and G. Glöckner, Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes, Current Biology, vol.18, issue.6, pp.410-418, 2008.
DOI : 10.1016/j.cub.2008.02.051

K. Ochi, T. Nishizawa, T. Inaoka, A. Yamada, K. Hashimoto et al.,

, Heterologous expression of a plant RelA-SpoT homologue results in increased stress tolerance in Saccharomyces cerevisiae by accumulation of the bacterial alarmone ppGpp, Microbiology, vol.158, pp.2213-2224

L. Olsen and K. Keegstra, The binding of precursor proteins to chloroplasts requires nucleoside triphosphates in the intermembrane space, The Journal of Biological Chemistry, vol.267, pp.433-439, 1992.

J. Pfalz and T. Pfannschmidt, Essential nucleoid proteins in early chloroplast development, Trends in Plant Science, vol.18, issue.4, pp.186-194, 2013.
DOI : 10.1016/j.tplants.2012.11.003

T. Pfannschmidt, R. Blanvillain, L. Merendino, F. Courtois, C. F. Liebers et al., Plastid RNA polymerases: orchestration of enzymes with different evolutionary origins controls chloroplast biogenesis during the plant life cycle, Journal of Experimental Botany, vol.5, issue.22, pp.6957-6973, 2015.
DOI : 10.1111/j.1365-313X.2008.03766.x

T. Pfannschmidt, K. Schütze, M. Brost, and R. Oelmüller, A Novel Mechanism of Nuclear Photosynthesis Gene Regulation by Redox Signals from the Chloroplast during Photosystem Stoichiometry Adjustment, Journal of Biological Chemistry, vol.1402, issue.39, pp.36125-36130, 2001.
DOI : 10.1098/rstb.2000.0697

K. Potrykus, H. Murphy, N. Philippe, and M. Cashel, ppGpp is the major source of growth rate control in E. coli, Environmental Microbiology, vol.95, issue.3, pp.563-575, 2011.
DOI : 10.1073/pnas.95.6.2908

J. Rochaix, Redox Regulation of Thylakoid Protein Kinases and Photosynthetic Gene Expression, Antioxidants & Redox Signaling, vol.18, issue.16, pp.2184-2201, 2013.
DOI : 10.1089/ars.2012.5110

W. Ross, P. Sanchez-vazquez, A. Chen, J. Lee, H. Burgos et al., ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response, Molecular Cell, vol.62, issue.6, pp.811-823
DOI : 10.1016/j.molcel.2016.04.029

W. Ross, C. Vrentas, P. Sanchez-vazquez, T. Gaal, and R. Gourse, The Magic Spot: A ppGpp Binding Site on E.??coli RNA Polymerase Responsible for Regulation of Transcription Initiation, Molecular Cell, vol.50, issue.3, pp.420-429, 2013.
DOI : 10.1016/j.molcel.2013.03.021

N. Sade, M. Rubio-wilhelmi, K. Umnajkitikorn, and E. Blumwald, Stress-induced senescence and plant tolerance to abiotic stress, Journal of Experimental Botany, vol.116, issue.4, 2018.
DOI : 10.1093/aob/mcv037

J. Sai and C. Johnson, Dark-Stimulated Calcium Ion Fluxes in the Chloroplast Stroma and Cytosol, THE PLANT CELL ONLINE, vol.14, issue.6, pp.1279-1291, 2002.
DOI : 10.1105/tpc.000653

M. Sato, K. Takahashi, Y. Ochiai, T. Hosaka, K. Ochi et al., Bacterial Alarmone, Guanosine 5???-Diphosphate 3???-Diphosphate (ppGpp), Predominantly Binds the ????? Subunit of Plastid-Encoded Plastid RNA Polymerase in Chloroplasts, ChemBioChem, vol.2, issue.7, pp.1227-1233, 2009.
DOI : 10.1093/oxfordjournals.pcp.a029456

M. Sato, T. Takahashi, K. Ochi, H. Matsuura, K. Nabeta et al., Bioscience, Biotechnology, and Biochemistry, vol.119, issue.1, pp.36-44, 2015.
DOI : 10.1093/jexbot/51.suppl_1.407

C. Schmitz-linneweber, M. Lampe, L. Sultan, and O. Ostersetzer-biran, Organellar maturases: A window into the evolution of the spliceosome, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.798-808, 2015.
DOI : 10.1016/j.bbabio.2015.01.009

I. Serrano, C. Audran, and S. Rivas, Chloroplasts at work during plant innate immunity, Journal of Experimental Botany, vol.6, issue.13, pp.3845-3854, 2016.
DOI : 10.4161/psb.5.4.10793

C. Spetea, E. Rintamäki, and B. Schoefs, Changing the light environment: chloroplast signalling and response mechanisms, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.369, issue.1640, 2014.
DOI : 10.1098/rstb.2013.0244

URL : https://hal.archives-ouvertes.fr/hal-02051226

S. Stael, B. Wurzinger, A. Mair, N. Mehlmer, U. Vothknecht et al., Plant organellar calcium signalling: an emerging field, Journal of Experimental Botany, vol.136, issue.4, pp.1525-1542, 2012.
DOI : 10.1104/pp.104.046367

W. Steinchen and G. Bange, The magic dance of the alarmones (p)ppGpp, Molecular Microbiology, vol.50, issue.4, pp.531-544, 2016.
DOI : 10.1016/j.molcel.2013.03.020

D. Stern, M. Goldschmidt-clermont, and M. Hanson, Chloroplast RNA Metabolism, Annual Review of Plant Biology, vol.61, issue.1, pp.125-155, 2010.
DOI : 10.1146/annurev-arplant-042809-112242

M. Sugliani, H. Abdelkefi, H. Ke, E. Bouveret, C. Robaglia et al., An Ancient Bacterial Signaling Pathway Regulates Chloroplast Function to Influence Growth and Development in Arabidopsis, The Plant Cell, vol.28, issue.3, pp.661-679, 2016.
DOI : 10.1105/tpc.16.00045

URL : https://hal.archives-ouvertes.fr/hal-01458177

D. Sun, G. Lee, and J. Lee, A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses, Nature Structural & Molecular Biology, vol.172, issue.10, pp.1188-1194
DOI : 10.1107/S0021889892009944

Y. Sun and W. Zerges, Translational regulation in chloroplasts for development and homeostasis, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1847, issue.9, pp.809-820, 2015.
DOI : 10.1016/j.bbabio.2015.05.008

J. Suzuki, P. Sriraman, Z. Svab, and P. Maliga, Unique Architecture of the Plastid Ribosomal RNA Operon Promoter Recognized by the Multisubunit RNA Polymerase in Tobacco and Other Higher Plants, THE PLANT CELL ONLINE, vol.15, issue.1, pp.195-205, 2003.
DOI : 10.1105/tpc.007914

M. Swiatecka-hagenbruch, K. Liere, and T. Borner, High diversity of plastidial promoters in Arabidopsis thaliana, Molecular Genetics and Genomics, vol.15, issue.6, pp.725-734, 2007.
DOI : 10.1007/978-3-540-48037-2_3

K. Takahashi, K. Kasai, and K. Ochi, Identification of the bacterial alarmone guanosine 5'-diphosphate 3'-diphosphate (ppGpp) in plants, Proceedings of the National Academy of Sciences, vol.279, issue.9, pp.4320-4324, 2004.
DOI : 10.1074/jbc.M311573200

S. Tanaka, M. Kihara, and M. Sugimoto, Structure and molecular characterization of barley nudix hydrolase genes, Bioscience, Biotechnology, and Biochemistry, vol.261, issue.3, pp.394-401, 2015.
DOI : 10.1093/nar/gki682

N. Tiller and R. Bock, The Translational Apparatus of Plastids and Its Role in Plant Development, Molecular Plant, vol.7, issue.7, pp.1105-1120, 2014.
DOI : 10.1093/mp/ssu022

Y. Tozawa, A. Nozawa, T. Kanno, T. Narisawa, S. Masuda et al., Calcium-activated (p)ppGpp Synthetase in Chloroplasts of Land Plants, Journal of Biological Chemistry, vol.7, issue.49, pp.35536-35545, 2007.
DOI : 10.1126/science.7569925

E. Van-der-biezen, J. Sun, M. Coleman, M. Bibb, and J. Jones, Arabidopsis RelA/SpoT homologs implicate (p)ppGpp in plant signaling, Proceedings of the National Academy of Sciences, pp.3747-3752, 2000.
DOI : 10.1093/emboj/18.13.3586

C. Vrentas, T. Gaal, W. Ross, R. Ebright, and R. Gourse, Response of RNA polymerase to ppGpp: requirement for the ?? subunit and relief of this requirement by DksA, Genes & Development, vol.19, issue.19, pp.2378-2387, 2005.
DOI : 10.1101/gad.1340305

Y. Woo, H. Ansari, and T. Otto, Author response, eLife, vol.18, p.6974, 2015.
DOI : 10.7554/eLife.06974.033

P. Wout, K. Pu, S. Sullivan, V. Reese, S. Zhou et al., The Escherichia coli GTPase CgtAE Cofractionates with the 50S Ribosomal Subunit and Interacts with SpoT, a ppGpp Synthetase/Hydrolase, Journal of Bacteriology, vol.186, issue.16, pp.5249-5257, 2004.
DOI : 10.1128/JB.186.16.5249-5257.2004

M. Yamburenko, Y. Zubo, and T. Borner, Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3???-5???-bisdiphosphate and activation by sigma factor 5, The Plant Journal, vol.168, issue.Suppl. 1, pp.1030-1041, 2015.
DOI : 10.1016/j.jplph.2011.01.009

M. Yamburenko, Y. Zubo, R. Vanková, V. Kusnetsov, O. Kulaeva et al., , 2013.

, Abscisic acid represses the transcription of chloroplast genes, Journal of Experimental Botany, vol.64, pp.4491-4502

Y. Zubo, M. Yamburenko, V. Kusnetsov, and T. Börner, Methyl jasmonate, gibberellic acid, and auxin affect transcription and transcript accumulation of chloroplast genes in barley, Journal of Plant Physiology, vol.168, issue.12, pp.1335-1344, 2011.
DOI : 10.1016/j.jplph.2011.01.009

Y. Zubo, M. Yamburenko, and S. Selivankina, Cytokinin Stimulates Chloroplast Transcription in Detached Barley Leaves, PLANT PHYSIOLOGY, vol.148, issue.2, pp.1082-1093, 2008.
DOI : 10.1104/pp.108.122275

Y. Zuo, Y. Wang, and T. Steitz, The Mechanism of E.??coli RNA Polymerase Regulation by ppGpp Is Suggested by the Structure of their Complex, Molecular Cell, vol.50, issue.3, pp.430-436, 2013.
DOI : 10.1016/j.molcel.2013.03.020