Cyclic nucleotide-gated ion channels, Physiol Rev, vol.82, p.12087135, 2002. ,
Handbook of Ion Channels, Journal of Chemical Information and Modeling, 2015. ,
The Permeability of the Cgmp-Activated Channel to Organic Cations in Retinal Rods of the Tiger Salamander, J Physiol, vol.460, p.7683718, 1993. ,
Multiple mechanisms underlying rectification in retinal cyclic nucleotide-gated (CNGA1) channels, Physiol Rep, vol.1, p.24400150, 2013. ,
A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels, Proc Natl Acad Sci U S A, vol.112, p.26100907, 2015. ,
Potassium channels as multi-ion single-file pores, J Gen Physiol, vol.72, p.722275, 1978. ,
Ion Channels of Excitable Membranes, 2001. ,
Physical origin of selectivity in ionic channels of biological membranes, Biophys J, vol.76, p.9876129, 1999. ,
Ion permeation mechanism of the potassium channel, Nature, vol.404, p.10786795, 2000. ,
Energetics of ion conduction through the K+ channel, Nature, vol.414, p.11689945, 2001. ,
Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands, Nature, vol.431, p.15483608, 2004. ,
Atypical mechanism of conduction in potassium channels, Proc Natl Acad Sci, vol.106, p.19805261, 2009. ,
Negative conductance caused by entry of sodium and cesium ions into the potassium channels of squid axons, J Gen Physiol, vol.60, p.4644327, 1972. ,
The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity, Science, vol.280, p.9525859, 1998. ,
Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels, J Gen Physiol, vol.129, p.17227917, 2007. ,
Non-Selective Conductance in Calcium Channels of Frog Muscle: Calcium Selectivity in a Single-File Pore, J Physiol, vol.353, p.6090646, 1984. ,
Mechanism of ion permeation through calcium channels, Nature, vol.309, p.6328315, 1984. ,
Permeation selectivity by competition in a delayed rectifier potassium channel, Science, vol.269, p.7618108, 1995. ,
The potassium permeability of a giant nerve fibre, J Physiol, vol.128, pp.61-88, 1955. ,
Protein interactions central to stabilizing the K, PNAS, p.21933962, 2011. ,
Multi-ion free energy landscapes underscore the microscopic mechanism of ion selectivity in the KcsA channel, Biochim Biophys Acta-Biomembr, vol.1858, p.26896693, 2016. ,
Equilibrium selectivity alone does not create K +-selective ion conduction in K + channels, Nat Commun, vol.4, p.24217508, 2013. ,
Determinants of cation transport selectivity: Equilibrium binding and transport kinetics, J Gen Physiol, vol.146, p.26078056, 2015. ,
Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites, Proc Natl Acad Sci, vol.108, p.21187421, 2011. ,
Structural studies of ion permeation and Ca2+ blockage of a bacterial channel mimicking the cyclic nucleotide-gated channel pore, Proc Natl Acad Sci U S A, vol.108, p.21187429, 2010. ,
Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 Å resolution, Nature, vol.414, p.11689936, 2001. ,
A Bias-Exchange Approach to Protein Folding, J Phys Chem B, vol.111, p.17419610, 2007. ,
A ring of threonines in the inner vestibule of the pore of CNGA1 channels constitutes a binding site for permeating ions, J Physiol, vol.590, p.22869010, 2012. ,
A kinetic model of Trp-cage folding from multiple biased molecular dynamics simulations, PLoS Comput Biol, vol.5, p.19662155, 2009. ,
A repulsion mechanism explains magnesium permeation and selectivity in CorA, Proc Natl Acad Sci, vol.111, p.24516146, 2014. ,
Evolving Methods for Macromolecular Crystallography [Internet]. Evolving Methods for Macromolecular Crystallography, 2007. ,
, Acta Crystallogr Sect D Biol Crystallogr, vol.66, pp.125-132, 2010.
, Acta Cryst, vol.66, pp.125-132, 2010.
, The CCP4 Suite: programs for protein crystallography, Collaborative Computational Project N. Collaborative Computational Project, Number, vol.4, pp.760-763, 1994.
Assessing and maximizing data quality in macromolecular crystallography. Current Opinion in Structural Biology, p.26209821, 2015. ,
Detecting and overcoming crystal twinning, Methods in Enzymology, pp.76068-76071, 1997. ,
REFMAC5 for the refinement of macromolecular crystal structures, Acta Crystallogr Sect D Biol Crystallogr, vol.67, p.21460454, 2011. ,
Coot: Model-building tools for molecular graphics, Acta Crystallogr Sect D Biol Crystallogr, vol.60, p.15572765, 2004. ,
PyMOL User's Guide ,
, , 2004.
Performance of the general amber force field in modeling aqueous POPC membrane bilayers, J Comput Chem, vol.28, p.17431937, 2007. ,
PLUMED 2: New feathers for an old bird, Comput Phys Commun, vol.185, pp.604-613, 2014. ,
Extension to the weighted histogram analysis method: combining umbrella sampling with free energy calculations, Comput Phys Commun, vol.135, pp.215-215, 2001. ,
METAGUI 3: A graphical user interface for choosing the collective variables in molecular dynamics simulations, Comput Phys Commun, vol.217, pp.204-209, 2017. ,
Cyclic nucleotide-gated channels. Pore topology studied through the accessibility of reporter cysteines, J Gen Physiol, vol.114, p.10469728, 1999. ,
Movement of the C-helix during the gating of cyclic nucleotide-gated channels, Biophys J, vol.83, p.12496096, 2002. ,
Individual Activity Coefficients of Ions in Aqueous Solutions, J Am Chem Soc, vol.59, pp.1675-1678, 1937. ,
Gating of cyclic nucleotide-gated channels is voltage dependent, Nat Commun, vol.3, p.22828633, 2012. ,