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Sequanix: a dynamic graphical interface for Snakemake workflows

Abstract : We designed a PyQt graphical user interface-Sequanix-aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users.
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https://hal-amu.archives-ouvertes.fr/hal-01874933
Contributor : Jacques van Helden <>
Submitted on : Monday, September 17, 2018 - 5:43:47 PM
Last modification on : Wednesday, May 6, 2020 - 3:26:01 PM
Long-term archiving on: : Tuesday, December 18, 2018 - 3:04:45 PM

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Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, et al.. Sequanix: a dynamic graphical interface for Snakemake workflows. Bioinformatics, Oxford University Press (OUP), 2018, 34 (11), pp.1934 - 1936. ⟨10.1093/bioinformatics/bty034⟩. ⟨hal-01874933⟩

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