R. Backofen, F. Amman, F. Costa, S. Findeiß, A. S. Richter et al., Bioinformatics of prokaryotic RNAs, RNA Biol, vol.11, pp.470-483, 2014.
DOI : 10.4161/rna.28647
URL : http://europepmc.org/articles/pmc4152356?pdf=render

L. Barquist and J. Vogel, Accelerating discovery and functional analysis of small RNAs with new technologies, Annu. Rev. Genet, vol.49, pp.367-394, 2015.
DOI : 10.1146/annurev-genet-112414-054804

E. G. Biondi, S. J. Reisinger, J. M. Skerker, M. Arif, B. S. Perchuk et al., Regulation of the bacterial cell cycle by an integrated genetic circuit, Nature, vol.444, pp.899-904, 2006.
DOI : 10.1038/nature05321

M. Brilli, M. Fondi, R. Fani, A. Mengoni, L. Ferri et al., The diversity and evolution of cell cycle regulation in alphaproteobacteria: a comparative genomic analysis, BMC Syst. Biol, vol.4, p.52, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00682798

L. Cheng and K. C. Keiler, Correct timing of dnaA transcription and initiation of DNA replication requires trans translation, J. Bacteriol, vol.191, pp.4268-4275, 2009.

J. Collier, Regulation of chromosomal replication in Caulobacter crescentus, Plasmid, vol.67, pp.76-87, 2012.
DOI : 10.1016/j.plasmid.2011.12.007

J. Collier, S. R. Murray, and L. Shapiro, DnaA couples DNA replication and the expression of two cell cycle master regulators, EMBO J, vol.25, pp.346-356, 2006.
DOI : 10.1038/sj.emboj.7600927
URL : http://emboj.embopress.org/content/25/2/346.full.pdf

T. Dutta and S. Srivastava, Small RNA-mediated regulation in bacteria: a growing palette of diverse mechanisms, Gene, vol.656, pp.60-72, 2018.

F. Eggenhofer, H. Tafer, P. F. Stadler, and I. L. Hofacker, RNApredator: fast accessibility-based prediction of sRNA targets, Nucleic Acids Res, vol.39, pp.149-154, 2011.
DOI : 10.1093/nar/gkr467
URL : https://academic.oup.com/nar/article-pdf/39/suppl_2/W149/18784606/gkr467.pdf

M. Felletti, D. J. Omnus, J. , and K. , Regulation of the replication initiator DnaA in Caulobacter crescentus, Biochim. Biophys. Acta, 2018.

A. Fioravanti, C. Fumeaux, S. S. Mohapatra, C. Bompard, M. Brilli et al., DNA binding of the cell cycle transcriptional regulator GcrA depends on N6-adenosine methylation in Caulobacter crescentus and other Alphaproteobacteria, PLoS Genet, vol.9, p.1003541, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01110809

A. R. Gruber, R. Lorenz, S. H. Bernhart, R. Neuböck, and I. L. Hofacker, The Vienna RNA websuite, Nucleic Acids Res, vol.36, pp.70-74, 2008.
DOI : 10.1093/nar/gkn188
URL : https://academic.oup.com/nar/article-pdf/36/suppl_2/W70/7623947/gkn188.pdf

D. L. Haakonsen, A. H. Yuan, and M. T. Laub, The bacterial cell cycle regulator GcrA is a ?70 cofactor that drives gene expression from a subset of methylated promoters, Genes Dev, vol.29, pp.2272-2286, 2015.

J. Holtzendorff, D. Hung, P. Brende, A. Reisenauer, P. H. Viollier et al., Oscillating global regulators control the genetic circuit driving a bacterial cell cycle, Science, vol.304, pp.983-987, 2004.
DOI : 10.1126/science.1095191

A. K. Hottes, L. Shapiro, and H. H. Mcadams, DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus, Mol. Microbiol, vol.58, pp.1340-1353, 2005.
DOI : 10.1111/j.1365-2958.2005.04912.x
URL : http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2005.04912.x/pdf

S. E. Jones, N. L. Ferguson, A. , and M. R. , New members of the ctrA regulon: the major chemotaxis operon in Caulobacter is CtrA dependent, Microbiol. Read. Engl, vol.147, pp.949-958, 2001.

K. K. Joshi, M. Bergé, S. K. Radhakrishnan, P. H. Viollier, and P. Chien, An adaptor hierarchy regulates proteolysis during a bacterial cell cycle, Cell, vol.163, pp.419-431, 2015.
DOI : 10.1016/j.cell.2015.09.030
URL : https://doi.org/10.1016/j.cell.2015.09.030

K. C. Keiler and L. Shapiro, TmRNA is required for correct timing of DNA replication in Caulobacter crescentus, J. Bacteriol, vol.185, 2003.

M. B. Kery, M. Feldman, J. Livny, and B. Tjaden, TargetRNA2: identifying targets of small regulatory RNAs in bacteria, Nucleic Acids Res, vol.42, pp.124-129, 2014.
DOI : 10.1093/nar/gku317
URL : https://academic.oup.com/nar/article-pdf/42/W1/W124/7436173/gku317.pdf

S. G. Landt, E. Abeliuk, P. T. Mcgrath, J. A. Lesley, H. H. Mcadams et al., Small non-coding RNAs in Caulobacter crescentus, Mol. Microbiol, vol.68, pp.600-614, 2008.
DOI : 10.1111/j.1365-2958.2008.06172.x
URL : https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2958.2008.06172.x

S. G. Landt, J. A. Lesley, L. Britos, and L. Shapiro, CrfA, a small noncoding RNA regulator of adaptation to carbon starvation in Caulobacter crescentus, J. Bacteriol, vol.192, pp.4763-4775, 2010.

K. Lasker, T. H. Mann, and L. Shapiro, An intracellular compass spatially coordinates cell cycle modules in Caulobacter crescentus, Curr. Opin. Microbiol, vol.33, pp.131-139, 2016.

M. T. Laub, S. L. Chen, L. Shapiro, and H. H. Mcadams, Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle, Proc. Natl. Acad. Sci. U.S.A, vol.99, pp.4632-4637, 2002.

M. T. Laub, H. H. Mcadams, T. Feldblyum, C. M. Fraser, and L. Shapiro, Global analysis of the genetic network controlling a bacterial cell cycle, Science, vol.290, pp.2144-2148, 2000.

S. S. Mohapatra, A. Fioravanti, and E. G. Biondi, DNA methylation in Caulobacter and other Alphaproteobacteria during cell cycle progression, Trends Microbiol, vol.22, pp.528-535, 2014.

S. M. Murray, G. Panis, C. Fumeaux, P. H. Viollier, H. et al., Computational and genetic reduction of a cell cycle to its simplest, primordial components, PLoS Biol, vol.11, 2013.

M. C. Ouimet and G. T. Marczynski, Analysis of a cell-cycle promoter bound by a response regulator, J. Mol. Biol, vol.302, pp.761-775, 2000.

A. Reisenauer, K. Quon, and L. Shapiro, The CtrA response regulator mediates temporal control of gene expression during the Caulobacter cell cycle, J. Bacteriol, vol.181, pp.2430-2439, 1999.

J. H. Russell and K. C. Keiler, Subcellular localization of a bacterial regulatory RNA, Proc. Natl. Acad. Sci. U.S.A, vol.106, pp.16405-16409, 2009.

K. R. Ryan, S. Huntwork, and L. Shapiro, Recruitment of a cytoplasmic response regulator to the cell pole is linked to its cell cycle-regulated proteolysis, Proc. Natl. Acad. Sci. U.S.A, vol.101, 2004.

K. R. Ryan, E. M. Judd, and L. Shapiro, The CtrA response regulator essential for Caulobacter crescentus cell-cycle progression requires a bipartite degradation signal for temporally controlled proteolysis, J. Mol. Biol, vol.324, pp.443-455, 2002.

T. D. Schneider, G. D. Stormo, L. Gold, and A. Ehrenfeucht, Information content of binding sites on nucleotide sequences, J. Mol. Biol, vol.188, pp.415-431, 1986.

J. M. Schrader and L. Shapiro, Synchronization of Caulobacter crescentus for investigation of the bacterial cell cycle, J. Vis. Exp, 2015.

J. M. Schrader, B. Zhou, G. Li, K. Lasker, W. S. Childers et al., The coding and noncoding architecture of the Caulobacter crescentus genome, PLoS Genet, vol.10, p.1004463, 2014.

M. Z. Tien, A. Fiebig, and S. Crosson, Gene network analysis identifies a central post-transcriptional regulator of cellular stress survival. bioRxiv, p.212902, 2017.

J. Vogel and B. F. Luisi, Hfq and its constellation of RNA, Nat. Rev. Microbiol, vol.9, pp.578-589, 2011.

P. R. Wright, J. Georg, M. Mann, D. A. Sorescu, A. S. Richter et al., CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains, Nucleic Acids Res, vol.42, pp.119-123, 2014.

B. Zhou, J. M. Schrader, V. S. Kalogeraki, E. Abeliuk, C. B. Dinh et al., The global regulatory architecture of transcription during the Caulobacter cell cycle, PLoS Genet, vol.11, 2015.

M. Zuker, Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Res, vol.31, pp.3406-3415, 2003.