F. Abe, C. Kato, and K. Horikoshi, Pressure-regulated metabolism in microorganisms, Trends Microbiol, vol.7, pp.447-453, 1999.

A. Ali, B. Garel, M. Cuny, P. Miquel, J. C. Toubal et al., Luminous bacteria in the deep-sea waters near the ANTARES underwater neutrino telescope (Mediterranean Sea), Chem. Ecol, vol.26, pp.57-72, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00455642

G. F. Ames, C. Prody, and S. Kustu, Simple, rapid, and quantitative release of periplasmic proteins by chloroform, J. Bacteriol, vol.160, pp.1181-1183, 1984.

A. Amrani, A. Bergon, H. Holota, C. Tamburini, M. Garel et al., Transcriptomics reveal several gene expression patterns in the Piezophile Desulfovibrio hydrothermalis in response to hydrostatic pressure, PLOS ONE, vol.9, p.106831, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01628348

M. Ansaldi, C. Jourlin-castelli, M. Lepelletier, L. Theraulaz, and V. Mejean, Rapid dephosphorylation of the TorR response regulator by the TorS unorthodox sensor in Escherichia coli, J. Bacteriol, vol.183, pp.2691-2695, 2001.

M. Ansaldi, G. Simon, M. Lepelletier, and V. Mejean, The TorR highaffinity binding site plays a key role in both torR autoregulation and torCAD operon expression in Escherichia coli, J. Bacteriol, vol.182, pp.961-966, 2000.

E. Aono, T. Baba, T. Ara, T. Nishi, T. Nakamichi et al., Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments, Mol. Biosyst, vol.6, pp.1216-1226, 2010.

C. Baraquet, L. Theraulaz, M. Guiral, D. Lafitte, V. Mejean et al., TorT, a member of a new periplasmic binding protein family, triggers induction of the Tor respiratory system upon trimethylamine N-oxide electron-acceptor binding in Escherichia coli, J. Biol. Chem, vol.281, pp.38189-38199, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00335441

E. L. Barrett and H. S. Kwan, Bacterial reduction of trimethylamine oxide, Annu. Rev. Microbiol, vol.39, pp.131-149, 1985.

K. A. Bidle and D. H. Bartlett, RNA arbitrarily primed PCR survey of genes regulated by ToxR in the deep-sea bacterium Photobacterium profundum strain SS9, J. Bacteriol, vol.183, pp.1688-1693, 2001.

C. Bordi, M. Ansaldi, S. Gon, C. Jourlin-castelli, C. Iobbi-nivol et al., Genes regulated by TorR, the trimethylamine oxide response regulator of Shewanella oneidensis, J. Bacteriol, vol.186, pp.4502-4509, 2004.

S. Campanaro, F. De-pascale, A. Telatin, R. Schiavon, D. H. Bartlett et al., The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain, BMC Genomics, vol.13, p.567, 2012.

S. Campanaro, A. Vezzi, N. Vitulo, F. M. Lauro, M. Angelo et al., Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains, BMC Genomics, vol.6, p.122, 2005.

P. H. Clippard, T. , and R. C. , Raman spectra and vibrational assignments for trimethylamine, J. Chem. Phys, vol.50, pp.1472-1473, 1969.

D. Santos, J. P. Iobbi-nivol, C. Couillault, C. Giordano, G. Mejean et al., Molecular analysis of the trimethylamine N-oxide (TMAO) reductase respiratory system from a Shewanella species, J. Mol. Biol, vol.284, pp.421-433, 1998.

A. K. Dunn and E. V. Stabb, Genetic analysis of trimethylamine N-oxide reductases in the light organ symbiont Vibrio fischeri ES114, J. Bacteriol, vol.190, pp.5814-5823, 2008.

R. B. Frankel, D. A. Bazylinski, M. S. Johnson, T. , and B. L. , Magnetoaerotaxis in marine coccoid bacteria, Biophys. J, vol.73, issue.97, pp.78132-78135, 1997.

J. Fu, X. Bian, S. Hu, H. Wang, F. Huang et al., Full-length RecE enhances linear-linear homologous recombination and facilitates direct cloning for bioprospecting, Nat. Biotechnol, vol.30, pp.440-446, 2012.

X. Ge, A. S. Wexler, and S. L. Clegg, Atmospheric amines-part I. A review, Atmos. Environ, vol.45, pp.524-546, 2011.

O. Genest, M. Ilbert, V. Mejean, and C. Iobbi-nivol, TorD, an essential chaperone for TorA molybdoenzyme maturation at high temperature, J. Biol. Chem, vol.280, pp.15644-15648, 2005.

S. W. Gibb and A. D. Hatton, The occurrence and distribution of trimethylamine-N-oxide in Antarctic coastal waters, Mar. Chem, vol.91, pp.65-75, 2004.

M. B. Gillett, J. R. Suko, F. O. Santoso, Y. , and P. H. , Elevated levels of trimethylamine oxide in muscles of deep-sea gadiform teleosts: a high-pressure adaptation?, J. Exp. Zool, vol.279, pp.386-391, 1997.

H. L. He, X. L. Chen, X. Y. Zhang, C. Y. Sun, B. C. Zou et al., Novel use for the osmolyte trimethylamine N-oxide: retaining the psychrophilic characters of cold-adapted protease deseasin MCP-01 and simultaneously improving its thermostability, Mar. Biotechnol, vol.11, pp.710-716, 2009.

A. Ishii, T. Oshima, T. Sato, K. Nakasone, H. Mori et al., Analysis of hydrostatic pressure effects on transcription in Escherichia coli by DNA microarray procedure, Extremophiles, vol.9, pp.65-73, 2005.

H. Jian, S. Li, X. Tang, X. , and X. , A transcriptome resource for the deepsea bacterium Shewanella piezotolerans WP3 under cold and high hydrostatic pressure shock stress, Mar Genomics, vol.30, pp.87-91, 2016.

O. S. Kim, Y. J. Cho, K. Lee, S. H. Yoon, M. Kim et al., Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species, Int. J. Syst. Evol. Microbiol, vol.62, pp.716-721, 2012.

T. Le-bihan, J. Rayner, M. M. Roy, and L. Spagnolo, Photobacterium profundum under pressure: a MS-based label-free quantitative proteomics study, PLOS ONE, vol.8, p.60897, 2013.

J. V. Lee, P. Shread, A. L. Furniss, and T. N. Bryant, Taxonomy and description of Vibrio fluvialis sp, 1981.

, J. Appl. Bacteriol, vol.50, pp.73-94

K. Li, M. Bihan, and B. A. Methe, Analyses of the stability and core taxonomic memberships of the human microbiome, PLOS ONE, vol.8, p.63139, 2013.

I. Lidbury, J. C. Murrell, C. , and Y. , Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria, Proc. Natl. Acad. Sci. U.S.A, vol.111, pp.2710-2715, 2014.

I. D. Lidbury, J. C. Murrell, C. , and Y. , Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling, ISME J, vol.9, pp.760-769, 2015.

S. Martini, A. Ali, B. Garel, M. Nerini, D. Grossi et al., Effects of hydrostatic pressure on growth and luminescence of a moderatelypiezophilic luminous bacteria Photobacterium phosphoreum ANT-2200, PLOS ONE, vol.8, p.66580, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01988033

S. L. Mccrindle, U. Kappler, and A. G. Mcewan, Microbial dimethylsulfoxide and trimethylamine-N-oxide respiration, Adv. Microb. Physiol, vol.50, pp.147-198, 2005.

K. Nakasone, A. Ikegami, C. Kato, R. Usami, and K. Horikoshi, Mechanisms of gene expression controlled by pressure in deep-sea microorganisms, Extremophiles, vol.2, pp.149-154, 1998.

K. Nakasone, A. Ikegami, C. Kato, R. Usami, and K. Horikoshi, Analysis of cis-elements upstream of the pressure-regulated operon in the deep-sea barophilic bacterium Shewanella violacea strain DSS12, FEMS Microbiol. Lett, vol.176, pp.351-356, 1999.

K. Nakasone, A. Ikegami, H. Kawano, C. Kato, R. Usami et al., Transcriptional regulation under pressure conditions by RNA polymerase sigma(54) factor with a two-component regulatory system in Shewanella violacea, Extremophiles, vol.6, pp.89-95, 2002.

Y. Nogi, N. Masui, and C. Kato, Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment, Extremophiles, vol.2, pp.1-7, 1998.

P. M. Oger, J. , and M. , The many ways of coping with pressure, Res. Microbiol, vol.161, pp.799-809, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00618586

Y. Ohke, A. Sakoda, C. Kato, Y. Sambongi, J. Kawamoto et al., Regulation of cytochrome c-and quinol oxidases, and piezotolerance of their activities in the deep-sea piezophile Shewanella violacea DSS12 in response to growth conditions, Biosci. Biotechnol. Biochem, vol.77, pp.1522-1528, 2013.

E. Petrov, P. R. Rohde, B. Cornell, and B. Martinac, The protective effect of osmoprotectant TMAO on bacterial mechanosensitive channels of small conductance MscS/MscK under high hydrostatic pressure, Channels, vol.6, pp.262-271, 2012.

L. M. Proctor and R. P. Gunsalus, Anaerobic respiratory growth of Vibrio harveyi, Vibrio fischeri and Photobacterium leiognathi with trimethylamine N-oxide, nitrate and fumarate: ecological implications, Environ. Microbiol, vol.2, pp.399-406, 2000.

C. B. Rong, Y. J. Huang, W. J. Zhang, W. Jiang, Y. Li et al., Ferrous iron transport protein B gene (feoB1) plays an accessory role in magnetosome formation in Magnetospirillum gryphiswaldense strain MSR-1, Res. Microbiol, vol.159, pp.530-536, 2008.

J. Saad-nehme, J. L. Silva, M. , and J. R. , Osmolytes protect mitochondrial F 0 F 1-ATPase complex against pressure inactivation, Biochim. Biophys. Acta Biomembr, vol.1546, pp.164-170, 2001.

C. L. Santini, B. Ize, A. Chanal, M. Muller, G. Giordano et al., A novel sec-independent periplasmic protein translocation pathway in Escherichia coli, EMBO. J, vol.17, pp.101-112, 1998.

B. A. Seibel, W. , and P. J. , Trimethylamine oxide accumulation in marine animals: relationship to acylglycerol storage, J. Exp. Biol, vol.205, pp.297-306, 2002.

G. Simon, C. Jourlin, M. Ansaldi, M. C. Pascal, M. Chippaux et al., Binding of the TorR regulator to cis-acting direct repeats activates tor operon expression, Mol. Microbiol, vol.17, pp.971-980, 1995.

H. Tamegai, S. Nishikawa, M. Haga, and D. H. Bartlett, The respiratory system of the piezophile Photobacterium profundum SS9 grown under various pressures, Biosci. Biotechnol. Biochem, vol.76, pp.1506-1510, 2012.

A. Vezzi, S. Campanaro, M. Angelo, F. Simonato, N. Vitulo et al., Life at depth: Photobacterium profundum genome sequence and expression analysis, Science, vol.307, pp.1459-1461, 2005.
DOI : 10.1126/science.1103341

F. P. Wang, J. B. Wang, H. H. Jian, B. Zhang, S. K. Li et al., Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3, PLOS ONE, vol.3, 2008.

T. J. Welch and D. H. Bartlett, Identification of a regulatory protein required for pressure-responsive gene expression in the deep-sea bacterium Photobacterium species strain SS9, Mol. Microbiol, vol.27, pp.977-985, 1998.

L. Xiong, H. H. Jian, Y. X. Zhang, X. , and X. , The two sets of DMSO respiratory systems of Shewanella piezotolerans WP3 are involved in deep sea environmental adaptation, Front. Microbiol, vol.7, p.1418, 2016.

P. H. Yancey, M. E. Clark, S. C. Hand, R. D. Bowlus, and G. N. Somero, Living with water stress: evolution of osmolyte systems, Science, vol.217, pp.1214-1222, 1982.
DOI : 10.1126/science.7112124

P. H. Yancey, M. E. Gerringer, J. C. Drazen, A. A. Rowden, J. et al., Marine fish may be biochemically constrained from inhabiting the deepest ocean depths, Proc. Natl. Acad. Sci. U.S.A, vol.111, pp.4461-4465, 2014.
DOI : 10.1073/pnas.1322003111

URL : http://www.pnas.org/content/111/12/4461.full.pdf

S. D. Zhang, C. L. Santini, W. J. Zhang, V. Barbe, S. Mangenot et al., Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200, Extremophiles, vol.20, pp.301-310, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01410136

Q. Zou, B. J. Bennion, V. Daggett, M. , and K. P. , The molecular mechanism of stabilization of proteins by TMAO and its ability to counteract the effects of urea, J. Am. Chem. Soc, vol.124, pp.1192-1202, 2002.