An automated method for finding molecular complexes in large protein interaction networks, Bmc Bioinformatics, vol.4, p.27, 2003. ,
Node centrality indices in food webs: Rank orders versus distributions, Ecol Complex, vol.7, pp.471-477, 2010. ,
Assessing short-term variability of protist community in marine system during spring-summer transition period, ISME J ,
Spatio-temporal variations of marine biofilm communities colonizing artificial substrata including antifouling coatings in contrasted French coastal environments, Microb Ecol, vol.74, pp.585-598, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01599314
Pioneer marine biofilms on artificial surfaces including antifouling coatings immersed in two contrasting French Mediterranean coast sites, Biofouling, vol.28, pp.453-463, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01362664
Master recyclers: features and functions of bacteria associated with phytoplankton blooms, Nat Rev Micro, vol.12, pp.686-698, 2014. ,
Interactions in multispecies biofilms: do they actually matter?, Trends in Microbiology, vol.22, pp.84-91, 2014. ,
Antifouling coatings influence both abundance and community structure of colonizing biofilms: a case study in the Northwestern Mediterranean Sea, Applied and Environmental Microbiology, vol.80, pp.4821-4831, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01364362
Early marine bacterial biofilm on a copperbased antifouling paint, International Biodeterioration & Biodegradation, vol.83, pp.71-76, 2013. ,
Responses of soil microbial activity to cadmium pollution and elevated CO2, Scientific Reports, vol.4, p.6, 2014. ,
Qualitative and quantitative changes in marine biofilms as a function of temperature and salinity in summer and winter, Biofilms, vol.2, pp.183-195, 2006. ,
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight, ISME J, vol.7, pp.2259-2273, 2013. ,
Evidencing the natural and anthropogenic processes controlling trace metals dynamic in a highly stratified estuary: The Krka River estuary, Marine Pollution Bulletin, vol.94, pp.199-216, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01445192
Trace metal contamination as a toxic and structuring factor impacting ultraphytoplankton communities in a multicontaminated Mediterranean coastal area, 2017. ,
Microbial biofilms, Annual Review of Microbiology, vol.49, pp.711-745, 1995. ,
Biofilm formation and antibiotic production in Ruegeria mobilis are influenced by intracellular concentrations of cyclic dimeric guanosinmonophosphate, Environmental Microbiology, vol.16, pp.1252-1266, 2014. ,
Composition and enzymatic function of particle-associated and free-living bacteria: a coastal/offshore comparison, ISME J, vol.8, pp.2167-2179, 2014. ,
Sedimentary dynamics of coastal organic matter: An assessment of the porewater size/reactivity model by spectroscopic techniques, Estuar Coast Shelf Sci, vol.151, pp.100-111, 2014. ,
Evidencing the impact of coastal contaminated sediments on mussels through Pb stable isotopes composition, Environmental Science & Technology, vol.49, pp.11438-11448, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01394605
Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes, Applied Environmental Microbiology, vol.66, pp.467-475, 2000. ,
Numerical dominance and phylotype diversity of marine Rhodobacter species during early colonization of submerged surfaces in coastal marine waters as 22 determined by 16S ribosomal DNA sequence analysis and fluorescence in situ hybridization, Applied Environmental Microbiology, vol.68, pp.496-504, 2002. ,
Microbial surface colonization and biofilm development in marine environments, Microbiology and Molecular Biology Reviews, vol.80, pp.91-138, 2016. ,
Cross-ocean distribution of Rhodobacterales bacteria as primary surface colonizers in temperate coastal marine waters, Applied Environmental Microbiology, vol.74, pp.52-60, 2008. ,
Microbial biofilms: from ecology to molecular genetics, Microbiol Mol Biol Rev, vol.64, pp.847-867, 2000. ,
Plastics in the North Atlantic garbage patch: A boatmicrobe for hitchhikers and plastic degraders, Sci Total Environ, vol.599, pp.1222-1232, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01599311
Biofilms: microbial life on surfaces, Emerging Infectious Deseases, vol.8, pp.881-890, 2002. ,
Correlation network analysis applied to complex biofilm communities, PLoS One, vol.6, p.12, 2011. ,
UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, vol.27, pp.2194-2200, 2011. ,
Unlocking the diversity and biotechnological potential of marine surface associated microbial communities, Curr Opin Microbiol, vol.11, pp.219-225, 2008. ,
Coherent dynamics and association networks among lake bacterioplankton taxa, ISME J, vol.6, pp.330-342, 2012. ,
Multi-species biofilms: living with friendly neighbors, FEMS Microbiology Reviews, vol.36, pp.990-1004, 2012. ,
Rhodobacteraceae are the key members of the microbial community of the initial biofilm formed in Eastern Mediterranean coastal seawater, FEMS Microbiol Ecol, vol.85, pp.348-357, 2013. ,
Competition, not cooperation, dominates interactions among culturable microbial species, Current Biology, vol.22, pp.1845-1850, 2012. ,
DOI : 10.1016/j.cub.2012.08.005
URL : https://doi.org/10.1016/j.cub.2012.08.005
Microbial community structure and its functional implications. Nature 459. Fuhrman JA, Cram JA & Needham DM (2015) Marine microbial community dynamics and their ecological interpretation, Nat Rev Microbiol, vol.13, pp.133-146, 2009. ,
DOI : 10.1038/nature08058
Ecology of the rare microbial biosphere of the Arctic Ocean, Proc Natl Acad Sci U S A, vol.106, pp.22427-22432, 2009. ,
Pole-to-pole biogeography of surface and deep marine bacterial communities, Proceedings of the National Academy of Sciences, vol.109, pp.17633-17638, 2012. ,
Defining seasonal marine microbial community dynamics, ISME J, vol.6, pp.298-308, 2012. ,
Seasonality in ocean microbial communities, Science, vol.335, pp.671-676, 2012. ,
Chemical mediation of ternary interactions between marine holobionts and their environment as exemplified by the red alga Delisea pulchra, J Chem Ecol, vol.38, pp.442-450, 2012. ,
Composition and density of bacterial biofilms determine larval settlement of the polychaete Hydroides elegans, Mar Ecol-Prog Ser, vol.260, issue.23, pp.161-172, 2003. ,
Protein expression from zooplankton communities in a metal contaminated NW mediterranean coastal ecosystem, Mar Environ Res, vol.80, pp.12-26, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01893663
Bacterial community structure of biofilms on artificial surfaces in an estuary, Microb Ecol, vol.53, pp.153-162, 2007. ,
The dual role of microbes in corrosion, ISME J, vol.9, pp.542-551, 2015. ,
Development of a dualindex sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform, Applied and Environmental Microbiology, vol.79, pp.5112-5120, 2013. ,
Shifts in bacterial community composition associated with increased carbon cycling in a mosaic of phytoplankton blooms, ISME J, vol.10, pp.39-50, 2016. ,
Elevated nutrients change bacterial community composition and connectivity: high throughput sequencing of young marine biofilms, Biofouling, vol.32, pp.57-69, 2016. ,
Bacterial communities in the initial stage of marine biofilm formation on artificial surfaces, The Journal of Microbiology, vol.46, pp.174-182, 2008. ,
Molecular techniques revealed highly diverse microbial communities in natural marine biofilms on polystyrene dishes for invertebrate larval settlement, Microb Ecol, vol.68, pp.81-93, 2014. ,
In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system, Scientific Reports, vol.4, pp.10-22, 1984. ,
Inhibition of attachment of larval barnacles, Balanus amphitrite, by bacterial surface films, Mar Biol, vol.97, pp.199-206, 1988. ,
A limited legacy effect of copper in marine biofilms, Marine Pollution Bulletin, vol.109, pp.117-127, 2016. ,
Chemical multi-contamination drives benthic prokaryotic diversity in the anthropized Toulon Bay, Sci Total Environ, vol.556, pp.319-329, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01826037
Distribution and behaviour of some dissolved trace metals in the western Mediterranean Sea, Deep-Sea Res Part II-Top Stud Oceanogr, vol.44, pp.675-691, 1997. ,
Long-term microfouling on commercial biocidal fouling control coatings, Biofouling, vol.30, pp.1155-1164, 2014. ,
Dynamics and fates of trace metals chronically. input in a Mediterranean coastal zone impacted by a large urban area, Marine Pollution Bulletin, vol.69, pp.137-149, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01097079
Sulfate-reducing bacteria inhabiting natural corrosion deposits from marine steel structures, Appl Microbiol Biotechnol, vol.97, pp.7493-7504, 2013. ,
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples, Environmental Microbiology, vol.18, pp.1403-1414, 2015. ,
Relationship between bacterial community profile in biofilm and attachment of the acorn barnacle Balanus amphitrite, Aquat Microb Ecol, vol.33, pp.225-237, 2003. ,
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucleic Acids Res, vol.41, pp.590-596, 2013. ,
Mechanisms of competition in biofilm communities, Microbiology Spectrum, vol.3, 2015. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02017351
Marine biofilms on artificial surfaces: structure and dynamics, Environmental Microbiology, vol.15, pp.2879-2893, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01364131
Bioinspired nanocoatings for biofouling prevention by photocatalytic redox reactions, Scientific Reports, vol.7, p.12, 2017. ,
Effects of coating roughness and biofouling on ship resistance and powering, Biofouling, vol.23, pp.331-341, 2007. ,
Cytoscape: A software environment for integrated models of biomolecular interaction networks, Genome Res, vol.13, pp.2498-2504, 2003. ,
Metagenomic insights into particles and their associated microbiota in a coastal margin ecosystem, Frontiers in Microbiology, vol.5, 2014. ,
Seasonal dynamics of marine microbial community in the South Sea of Korea, PLoS One, vol.10, p.131633, 2015. ,
Distribution of dissolved Cd, Cu, Ni and Zn in the Adriatic Sea, Marine Pollution Bulletin, vol.32, pp.623-630, 1996. ,
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom, Science, vol.336, pp.608-611, 2012. ,
Oceanobacter-related bacteria are important for the degradation of petroleum aliphatic hydrocarbons in the tropical marine environment, Microbiology-(UK), vol.155, pp.3362-3370, 2009. ,
Oleibacter marinus gen. nov., sp. nov., a bacterium that degrades petroleum aliphatic hydrocarbons in a tropical marine environment, Int J Syst Evol Microbiol, vol.61, pp.375-380, 2011. ,
Effect of biofilm age on settlement of Mytilus edulis, Biofouling, vol.28, pp.9-15, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-00857492
Effect of cadmium on composition and diversity of bacterial communities in activated sludges, International Biodeterioration & Biodegradation, vol.55, pp.285-291, 2005. ,
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Applied Environmental Microbiology, vol.73, pp.5261-5267, 2007. ,
Site-specific variation in Antarctic marine biofilms established on artificial surfaces, Environmental Microbiology, vol.8, pp.1177-1190, 2006. ,
Inhibition and facilitation of settlement of epifaunal marine invertebrate larvae by microbial biofilm cues, Biofouling, vol.12, pp.81-118, 1997. ,
The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics, Environmental Microbiology, vol.15, pp.1302-1317, 2013. ,
Efficient statistical significance approximation for local similarity analysis of high-throughput time series data, Bioinformatics, vol.29, pp.230-237, 2013. ,
Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates, BMC Systems Biology, vol.5, p.15, 2011. ,
Silver nanoparticles impact biofilm communities and mussel settlement, Scientific Reports, vol.6, p.37406, 2016. ,
Life in the "plastisphere": microbial communities on plastic marine debris, Environmental Science & Technology, vol.47, pp.7137-7146, 2013. ,
Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system, Scientific Reports, vol.4, p.7, 2014. ,
Isolation and characterization of diesel degrading bacteria, Sphingomonas sp and Acinetobacter junii from petroleum contaminated soil, Front Earth Sci, vol.8, pp.58-63, 2014. ,