A comprehensive transcript index of 462 the human genome generated using microarrays and computational approaches ,
, Genome Biol, vol.5, p.73, 2004.
Modular regulatory principles of large non-coding RNAs, Nature, vol.465, pp.339-346, 2012. ,
GENCODE: the reference human genome 467 annotation for The ENCODE Project, Genome Res, vol.22, pp.1760-1774, 2012. ,
Regulation of transcription by long noncoding RNAs, Annu. 469 Rev. Genet, vol.48, pp.433-455, 2014. ,
Long Noncoding RNAs in Cancer Pathways, Cancer Cell, vol.471, pp.452-463, 2016. ,
Gene expression signatures define novel 473 oncogenic pathways in T cell acute lymphoblastic leukemia, Cancer Cell, vol.1, pp.75-474, 2002. ,
HOXA genes are included in genetic and 476 biologic networks defining human acute T-cell leukemia (T-ALL), Blood, vol.477, pp.274-286, 2005. ,
, Blood, vol.124, pp.3038-3040, 2014.
Emerging concepts of epigenetic 480 dysregulation in hematological malignancies, Nat. Immunol, vol.17, 2016. ,
Long noncoding RNA signatures define 482 oncogenic subtypes in T-cell acute lymphoblastic leukemia, Leukemia, vol.30, pp.1927-483, 1930. ,
Genome-wide mapping and characterization 485 of Notch-regulated long noncoding RNAs in acute leukemia, Cell, vol.158, pp.593-606, 2014. ,
LncRNA NALT interaction with NOTCH1 promoted cell 487 proliferation in pediatric T cell acute lymphoblastic leukemia, Sci Rep, vol.5, 2015. ,
Identification of novel lncRNAs regulated by the TAL1 489 complex in T-cell acute lymphoblastic leukemia, Leukemia, 2018. ,
T-ALL and thymocytes: a message of noncoding 491 RNAs, J Hematol Oncol, vol.10, p.66, 2017. ,
Comprehensive analysis of transcriptome 493 variation uncovers known and novel driver events in T-cell acute lymphoblastic 494 leukemia, PLoS Genet, vol.9, p.1003997, 2013. ,
Identification of novel transcripts in 496 annotated genomes using RNA-Seq, Bioinformatics, vol.27, pp.2325-2329, 2011. ,
BEDTools: a flexible suite of utilities for comparing genomic 498 features, Bioinformatics, vol.26, pp.841-842, 2010. ,
Differential gene and transcript expression analysis 500 of RNA-seq experiments with TopHat and Cufflinks, Nat Protoc, vol.7, pp.562-578, 2012. ,
Coding-Potential Assessment Tool using an 502 alignment-free logistic regression model, Nucleic Acids Res, vol.41, p.74, 2013. ,
DOI : 10.1093/nar/gkt006
URL : https://academic.oup.com/nar/article-pdf/41/6/e74/25339876/gkt006.pdf
A benchmark of gene expression tissue-504 specificity metrics, Brief. Bioinformatics, vol.18, pp.205-214, 2017. ,
The GENCODE v7 catalog of human long 506 noncoding RNAs: analysis of their gene structure, evolution, and expression, Genome 507 Res, vol.22, pp.1775-1789, 2012. ,
Genome-wide identification of zero nucleotide 509 recursive splicing in Drosophila, Nature, vol.521, pp.376-379, 2015. ,
Kcnq1ot1 antisense noncoding RNA 511 mediates lineage-specific transcriptional silencing through chromatin-level regulation ,
DOI : 10.1016/j.molcel.2008.08.022
URL : https://doi.org/10.1016/j.molcel.2008.08.022
, Mol. Cell, vol.32, pp.232-246, 2008.
Polycomb proteins targeted by a short repeat RNA to 514 the mouse X chromosome, Science, vol.322, pp.750-756, 2008. ,
GREAT improves functional interpretation of cis-516 regulatory regions, Nat. Biotechnol, vol.28, pp.495-501, 2010. ,
Long noncoding RNAs usher in a new era in the biology of 518 enhancers, Cell, vol.154, pp.1190-1193, 2013. ,
The molecular basis of T cell acute lymphoblastic 520 leukemia, J. Clin. Invest, vol.122, pp.3398-3406, 2012. ,
TAL2, a helix-loop-helix gene activated by the 522 (7;9)(q34;q32) translocation in human T-cell leukemia, Proc. Natl. Acad. Sci. U.S.A, vol.523, pp.11416-11420, 1991. ,
Site-specific recombination of the tal-1 gene is a 525 common occurrence in human T cell leukemia, EMBO J, vol.9, pp.3343-3351, 1990. ,
MLL translocations specify a distinct 527 gene expression profile that distinguishes a unique leukemia, Nat. Genet, vol.528, pp.41-47, 2002. ,
Large-scale prediction of long non-coding RNA functions in 530 a coding-non-coding gene co-expression network, Nucleic Acids Res, vol.39, p.3864, 2011. ,