Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels, Electrophoresis, vol.8, issue.2, pp.93-99, 1987. ,
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis, Molecular Biology and Evolution, vol.17, issue.4, pp.540-552, 2000. ,
Degradation of ?-lactam antibiotics, Current Science, vol.87, issue.12, pp.1684-1695, 2004. ,
CreA modulates the XlnRinduced expression on xylose of Aspergillus niger genes involved in xylan degradation, Research in Microbiology, vol.150, issue.4, pp.80053-80062, 1999. ,
Lateral genomics, Trends in Genetics, vol.15, issue.12, pp.1877-1883, 1999. ,
The genome of the social amoeba Dictyostelium discoideum, Nature, vol.435, issue.7038, pp.43-57, 2005. ,
Locating proteins in the cell using TargetP, SignalP and related tools, Nature Protocols, vol.2, issue.4, pp.953-971, 2007. ,
OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy, Genome Biology, vol.16, issue.1, p.157, 2015. ,
High-quality draft assemblies of mammalian genomes from massively parallel sequence data, Proceedings of the National Academy of Sciences of the United States of America, vol.108, pp.1513-1518, 2011. ,
Distribution and diversity of soda lake alkaliphiles, Extremophiles handbook, pp.27-54, 2011. ,
,
MycoCosm portal: Gearing up for 1000 fungal genomes, Nucleic Acids Research, vol.42, issue.D1, pp.699-704, 2014. ,
Sodiomyces alkalinus, a new holomorphic alkaliphilic ascomycete within the Plectosphaerellaceae. Persoonia -Molecular Phylogeny and Evolution of Fungi, vol.31, pp.147-158, 2013. ,
On the diversity of fungi from soda soils, Fungal Diversity, vol.76, issue.1, pp.27-74, 2016. ,
Are alkalitolerant fungi of the Emericellopsis lineage (Bionectriaceae) of marine origin? IMA Fungus, vol.4, pp.213-228, 2013. ,
Introduction and history of alkaliphiles, Extremophiles handbook, pp.19-26, 2011. ,
Microbial diversity and ecology of alkaline environments, Journey to diverse microbial worlds, pp.177-190, 2000. ,
Microbial diversity of soda lakes, Extremophiles, vol.2, issue.3, pp.191-200, 1998. ,
Functional analysis of Botrytis cinerea pectin methylesterase genes by PCR-based targeted mutagenesis: Bcpme1 and Bcpme2 are dispensable for virulence of strain B05.10, Molecular Plant Pathology, vol.6, issue.6, pp.641-652, 2005. ,
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability, Molecular Biology and Evolution, vol.30, issue.4, pp.772-780, 2013. ,
Horizontal gene transfer in eukaryotic evolution, Nature Reviews Genetics, vol.9, issue.8, pp.605-618, 2008. ,
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens, PLoS Pathogens, vol.7, issue.7, 2011. ,
Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature, vol.227, issue.5259, pp.680-685, 1970. ,
The carbohydrate-active enzymes database (CAZy) in 2013, Nucleic Acids Research, vol.42, issue.D1, pp.490-495, 2014. ,
Acquisition of prokaryotic genes by fungal genomes, Trends in Genetics, vol.26, issue.1, pp.5-8, 2010. ,
Rnnotator: An automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads, BMC Genomics, vol.11, issue.1, 2010. ,
Effects of environment on the composition of bacterial cells, Annual Review of Microbiology, vol.17, issue.1, pp.61-86, 1963. ,
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses, Nature Genetics, vol.44, issue.9, pp.1060-1065, 2012. ,
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88, Nature Biotechnology, vol.25, issue.2, pp.221-231, 2007. ,
The MEROPS batch BLAST: A tool to detect peptidases and their non-peptidase homologues in a genome, Biochimie, vol.90, issue.2, pp.243-259, 2008. ,
MEROPS: The database of proteolytic enzymes, their substrates and inhibitors, Nucleic Acids Research, vol.42, issue.D1, pp.343-350, 2014. ,
Extraction of DNA from plant tissues, Plant molecular biology manual, vol.6, pp.1-10, 1988. ,
Lateral gene transfer between prokaryotes and multicellular eukaryotes: Ongoing and significant?, BMC Biology, vol.7, issue.1, p.20, 2009. ,
Copepods in turbid shallow soda lakes accumulate unexpected high levels of carotenoids, PLoS One, vol.7, issue.8, 2012. ,
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote, Science, vol.339, issue.6124, pp.1207-1210, 2013. ,
BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologs, Bioinformatics, issue.19, pp.3210-3212, 2015. ,
Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi, Current Biology, vol.21, issue.2, pp.134-139, 2011. ,
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, vol.30, issue.9, pp.1312-1313, 2014. ,
The endopolygalacturonase gene Bcpg1 is required for full virulence of Botrytis cinerea, Molecular Plant-Microbe Interactions, vol.11, issue.10, pp.1009-1016, 1998. ,
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum, Nature Biotechnology, vol.26, issue.10, pp.1161-1168, 2008. ,
Fungal proteases and their pathophysiological effects, Mycopathologia, vol.171, issue.5, pp.299-323, 2011. ,
Epicontinental soda lakes as probable relict biotopes of terrestrial biota formation, vol.62, pp.473-479, 1993. ,
The alkaliphilic microbial community and its functional diversity, Microbiology, vol.68, issue.5, pp.503-521, 1999. ,