Land clearing and the biofuel carbon debt, Science, vol.319, pp.1235-1238, 2008. ,
Sustainable production of second-generation biofuels: potential and perspectives in major economies and developing countries. Renewable Energy Division, International Energy Agency (IEA), 2010. ,
Microbial cellulose utilization: fundamentals and biotechnology, Microbiol Mol Biol Rev, vol.66, pp.506-577, 2002. ,
A parts list for fungal cellulosomes revealed by comparative genomics, Nat Microbiol, vol.2, p.17087, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01608502
Progress and challenges in enzyme development for biomass utilization, Adv Biochem Eng Biotechnol, vol.108, pp.95-120, 2007. ,
Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans, J Bacteriol, vol.191, pp.5697-5705, 2009. ,
Processivity, substrate binding, and mechanism of cellulose hydrolysis by Thermobifida fusca Cel9A, Appl Environ Microbiol, vol.73, pp.3165-3172, 2007. ,
The carbohydrate-active enzymes database (CAZy) in 2013, Nucleic Acids Res, vol.42, pp.490-495, 2014. ,
An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides, Science, vol.330, pp.219-222, 2010. ,
Oxidoreductive cellulose depolymerization by the enzymes cellobiose dehydrogenase and glycoside hydrolase 61, Appl Environ Microbiol, vol.77, pp.7007-7015, 2011. ,
Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family, Biochemistry, vol.49, pp.3305-3316, 2010. ,
Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases, Proc Natl Acad Sci U S A, vol.111, pp.8446-8451, 2014. ,
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes, Biotechnol Biofuels, vol.6, p.41, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01268121
The Cytophaga group: a contribution to the biology of Myxobacteria, Bacteriol Rev, vol.6, pp.143-196, 1942. ,
Études sur la microbiologie du sol sur la degradation de la cellulose dans le sol, Ann Inst Pasteur, vol.43, pp.549-633, 1929. ,
The family Cytophagaceae, pp.577-593, 2014. ,
On the decomposition of cellulose by an aerobic organism (Spirochaeta cytophaga, n sp), J Agric Sci, vol.9, pp.143-173, 1919. ,
Cellulose and cellodextrin utilization by the cellulolytic bacterium Cytophaga hutchisonii, Bioresour Technol, vol.101, pp.6432-6437, 2010. ,
Draft genome sequence of cellulosedigesting bacterium Sporocytophaga myxococcoides PG-01, Genome Announc, vol.2, pp.1154-1168, 2014. ,
, Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii, 2007.
, Appl Environ Microbiol, vol.73, pp.225-232
Characterization of a family 5 glycoside hydrolase isolated from the outer membrane of cellulolytic Cytophaga hutchinsonii, Appl Microbiol Biotechnol, vol.97, pp.3925-3937, 2013. ,
Expression and characteristics of a Ca 2 -dependent endoglucanase from Cytophaga hutchinsonii, Appl Microbiol Biotechnol, vol.99, pp.9617-9623, 2015. ,
The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides, Annu Rev Microbiol, vol.58, pp.521-554, 2004. ,
Three microbial strategies for plant cell wall degradation, Ann N Y Acad Sci, vol.1125, pp.289-297, 2008. ,
Evidence for a novel mechanism of microbial cellulose degradation, Cellulose, vol.16, pp.723-727, 2009. ,
Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm, J Biol Chem, vol.284, pp.24673-24677, 2009. ,
A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes, Nature, vol.506, pp.498-502, 2014. ,
A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin, Biotechnol Biofuels, vol.9, 2016. ,
Outer membrane proteins related to SusC and SusD are not required for Cytophaga hutchinsonii cellulose utilization, 2015. ,
, Appl Microbiol Biotechnol, vol.99, pp.6339-6350
Adaptation of Sporocytophaga myxococcoides to sugars, J Gen Microbiol, vol.3, pp.224-235, 1949. ,
Fine structure of Sporocytophaga myxococcoides, Arch Mikrobiol, vol.57, pp.199-213, 1967. ,
Decomposition of xylan by Sporocytophaga myxococcoides, Nature, vol.177, p.845, 1956. ,
Gliding motility and Por secretion system genes are widespread among members of the phylum bacteroidetes, J Bacteriol, vol.195, pp.270-278, 2013. ,
Deletion of the Cytophaga hutchinsonii type IX secretion system gene sprP results in defects in gliding motility and cellulose utilization, Appl Microbiol Biotechnol, vol.98, pp.763-775, 2014. ,
, Proteomic Analyses of Cellulolytic Soil Bacteroidetes, vol.3, pp.240-258, 2018.
Protein substrates of a novel secretion system are numerous in the Bacteroidetes phylum and have in common a cleavable C-terminal secretion signal, extensive posttranslational modification, and cell-surface attachment, J Proteome Res, vol.12, pp.4449-4461, 2013. ,
The type IX secretion system (T9SS): highlights and recent insights into its structure and function, Front Cell Infect Microbiol, vol.7, 2017. ,
Periplasmic Cytophaga hutchinsonii endoglucanases are required for use of crystalline cellulose as the sole source of carbon and energy, Appl Environ Microbiol, vol.82, pp.4835-4845, 2016. ,
Identification and characterization of a large protein essential for degradation of the crystalline region of cellulose by Cytophaga hutchinsonii, Appl Environ Microbiol, issue.1, 2017. ,
A small periplasmic protein essential for Cytophaga hutchinsonii cellulose digestion, Appl Microbiol Biotechnol, vol.100, pp.1935-1944, 2016. ,
Expression and characterization of a glucose-tolerant beta-1,4-glucosidase with wide substrate specificity from Cytophaga hutchinsonii, Appl Microbiol Biotechnol, vol.101, pp.1919-1926, 2017. ,
Novel outer membrane protein involved in cellulose and cellooligosaccharide degradation by Cytophaga hutchinsonii, Appl Environ Microbiol, vol.80, pp.4511-4518, 2014. ,
Functional studies of beta-glucosidases of Cytophaga hutchinsonii and their effects on cellulose degradation, Front Microbiol, vol.8, p.140, 2017. ,
The unusual cellulose utilization system of the aerobic soil bacterium Cytophaga hutchinsonii, Appl Microbiol Biotechnol, vol.101, pp.7113-7127, 2017. ,
A molecular Swiss army knife: OmpA structure, function and expression, FEMS Microbiol Lett, vol.273, pp.1-11, 2007. ,
Stability of the pstS transcript of Escherichia coli, Arch Microbiol, vol.191, pp.105-112, 2009. ,
Isolation and characterization of the proton-translocating NADH: ubiquinone oxidoreductase from Escherichia coli, Eur J Biochem, vol.230, pp.538-548, 1995. ,
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ, Mol Cell Proteomics, vol.13, pp.2513-2526, 2014. ,
Characterization of a multi-function processive endoglucanase CHU_2103 from Cytophaga hutchinsonii, Appl Microbiol Biotechnol, vol.98, pp.6679-6687, 2014. ,
Cellulase and xylanase release from Bacteroides succinogenes and its importance in the rumen environment, Appl Environ Microbiol, vol.42, pp.886-896, 1981. ,
Evaluating models of cellulose degradation by Fibrobacter succinogenes S85, PLoS One, vol.10, 2015. ,
Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity, Environ Microbiol, vol.19, pp.2701-2714, 2017. ,
The cellulosome and cellulose degradation by anaerobic bacteria, Appl Microbiol Biotechnol, vol.56, pp.634-649, 2001. ,
The crystal structure of endoglucanase CelA, a family 8 glycosyl hydrolase from Clostridium thermocellum, Structure, vol.4, issue.96, pp.31-38, 1996. ,
Characterization of the Porphyromonas gingivalis type IX secretion trans-envelope PorKLMNP core complex, J Biol Chem, vol.292, pp.3252-3261, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01780705
The family 6 carbohydrate-binding modules have coevolved with their appended catalytic modules toward similar substrate specificity, Glycobiology, vol.19, pp.615-623, 2009. ,
Molecular cloning and biochemical characterization of a family-9 endoglucanase with an unusual structure from the gliding bacteria Cytophaga hutchinsonii, Appl Biochem Biotechnol, vol.141, pp.127-138, 2007. ,
Deletion of a gene encoding a putative peptidoglycan-associated lipoprotein prevents degradation of the crystalline region of cellulose in Cytophaga hutchinsonii, Front Microbiol, vol.9, p.632, 2018. ,
Development of techniques to genetically manipulate members of the genera Cytophaga, Flavobacterium, Flexibacter, and Sporocytophaga, Appl Environ Microbiol, vol.62, pp.3017-3022, 1996. ,
Efficient subfractionation of Gram-negative bacteria for proteomics studies, J Proteome Res, vol.9, pp.6135-6147, 2010. ,
Proteomic investigation of the response of Enterococcus faecalis V583 when cultivated in urine, PLoS One, vol.10, 2015. ,
In-gel digestion for mass spectrometric characterization of proteins and proteomes, Nat Protoc, vol.1, pp.2856-2860, 2006. ,
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification, Nat Biotechnol, vol.26, pp.1367-1372, 2008. ,
Andromeda: a peptide search engine integrated into the MaxQuant environment, J Proteome Res, vol.10, pp.1794-1805, 2011. ,
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013, Nucleic Acids Res, vol.41, pp.1063-1069, 2012. ,
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes, Bioinformatics, vol.26, pp.1608-1615, 2010. ,