E. Faure and R. Barthélémy, True mitochondrial tRNA punctuation and initiation using overlapping stop and start codons at specific and conserved positions, In Mitochondrial DNA
URL : https://hal.archives-ouvertes.fr/hal-02009615

H. Seligmann and C. Intechopen, , pp.3-29, 2018.

E. Faure and R. Barthélémy, Specific mitochondrial sstRNAs in phylum Chaetognatha, Journal of Entomology and Zoology Studies, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02130653

T. M. Lowe and S. R. Eddy, tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence, Nucleic Acids Research, vol.25, issue.5, pp.955-964, 1997.

J. D. Thompson, D. G. Higgins, and T. J. Gibson, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994.

A. Elzanowski and J. Ostell, The genetic codes compiled at National Center for Biotechnology Information (NCBI), 2019.

D. A. Janies, J. R. Voight, and M. Daly, Echinoderm phylogeny including Xyloplax, a progenetic asteroid, Systematic Biology. Systematic Biology, vol.60, issue.4, pp.420-438, 2011.

M. Perseke, G. Fritzsch, K. Ramsch, M. Bernt, D. Merkle et al., Evolution of mitochondrial gene orders in echinoderms. Molecular phylogenetics and evolution, Molecular Phylogenetics and Evolution, vol.47, issue.2, pp.855-864, 2008.

J. D. Gaitán-espitia, R. F. Nespolo, and J. C. Opazo, The complete mitochondrial genome of the land snail Cornu aspersum (Helicidae: Mollusca): intra-specific divergence of protein-coding genes and phylogenetic considerations within Euthyneura, PLoS One, vol.8, issue.6, p.67299, 2013.

S. I. Yokobori and S. Paabo, tRNA editing in metazoans, Nature, vol.377, issue.6549, p.490, 1995.

N. Yamazaki, R. Ueshima, J. A. Terrett, S. Yokobori, M. Kaifu et al., Evolution of pulmonate gastropod mitochondrial genomes: comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures, Genetics, vol.145, issue.3, pp.749-758, 1997.

D. Ojala, C. Merkel, R. Gelfand, and G. Attardi, The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA, Cell, vol.22, issue.2, pp.393-403, 1980.

M. Kalanon, G. I. Mcfadden, and . Malaria, Plasmodium falciparum and its apicoplast, Biochemical Society transactions, vol.38, issue.3, pp.775-82, 2010.

P. Preiser, D. H. Williamson, and R. J. Wilson, tRNA genes transcribed from the plastid-like DNA of Plasmodium falciparum, Nucleic Acids Research, 1995.

R. J. Wilson, P. W. Denny, P. R. Preiser, K. Rangachari, K. Roberts et al., Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum, Journal of Molecular Biology, vol.261, issue.2, pp.155-172, 1996.

M. W. Gray, B. F. Lang, and G. Burger, Mitochondria of protists. Annual review of genetics, vol.38, pp.477-524, 2004.

J. Pütz, R. Giegé, and C. Florentz, Diversity and similarity in the tRNA world: overall view and case study on malaria-related tRNAs, FEBS Letters, vol.584, issue.2, pp.350-358, 2010.

R. E. Nisbet, D. P. Kurniawan, H. D. Bowers, and C. J. Howe, Transcripts in the Plasmodium apicoplast undergo cleavage at tRNAs and editing, and include antisense sequences, Protist, vol.167, issue.4, pp.377-388, 2016.

V. Cognat, G. Morelle, C. Megel, S. Lalande, J. Molinier et al., The nuclear and organellar tRNAderived RNA fragment population in Arabidopsis thaliana is highly dynamic, Nucleic Acids Research, vol.45, issue.6, pp.3460-3472, 2017.

E. L. Dahl, J. L. Shock, B. R. Shenai, J. Gut, J. L. Derisi et al., Tetracyclines specifically target the apicoplast of the malaria parasite Plasmodium falciparum, Antimicrobial Agents and Chemotherapy, vol.50, issue.9, pp.3124-3131, 2006.

E. Maréchal and M. F. Cesbron-delauw, The apicoplast: a new member of the plastid family, Trends in Plant Science. Trendsin Plant Science, vol.6, issue.5, pp.200-205, 2001.

W. Gilbert, Why genes in pieces?, Nature, vol.271, issue.5645, p.501, 1978.

V. Brázda, R. C. Laister, E. B. Jagelská, and C. Arrowsmith, Cruciform structures are a common DNA feature important for regulating biological processes, BMC molecular biology, vol.12, p.33, 2011.