A large open pangenome and a small core genome for giant pandoraviruses, Front. Microbiol, vol.9, p.1486, 2018. ,
DOI : 10.3389/fmicb.2018.01486
URL : https://hal.archives-ouvertes.fr/hal-01858914
Cedratvirus, a double-cork structured giant virus, is a distant relative of pithoviruses, Viruses, vol.8, pp.1-11, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01453281
Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae, Proc. Natl. Acad. Sci. U. S. A, vol.108, pp.17486-17491, 2011. ,
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J. Comput. Biol, vol.19, pp.455-477, 2012. ,
DOI : 10.1089/cmb.2012.0021
URL : http://europepmc.org/articles/pmc3342519?pdf=render
The expanding family of virophages, Viruses, vol.8, pp.1-16, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01453275
A new Zamilon-like virophage partial genome assembled from a bioreactor metagenome, Front. Microbiol, vol.6, p.1308, 2015. ,
DOI : 10.3389/fmicb.2015.01308
URL : https://www.frontiersin.org/articles/10.3389/fmicb.2015.01308/pdf
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions, Nucleic Acids Res, vol.29, pp.2607-2618, 2001. ,
Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, vol.30, pp.2114-2120, 2014. ,
DOI : 10.1093/bioinformatics/btu170
URL : https://academic.oup.com/bioinformatics/article-pdf/30/15/2114/17143152/btu170.pdf
Rio Negro virophage: sequencing of the near complete genome and transmission electron microscopy of viral factories and particles, Braz. J. Microbiol, vol.49, pp.260-261, 2018. ,
Samba virus?: a novel mimivirus from a giant rain forest, the Brazilian Amazon, Virol. J, vol.95, pp.1-11, 2014. ,
URL : https://hal.archives-ouvertes.fr/inserm-00990732
Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes, Proc. Natl. Acad. Sci. U.S.A, vol.102, pp.14689-14693, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00004653
Mimivirus and its Virophage, Annu. Rev. Genet, vol.43, pp.49-66, 2009. ,
DOI : 10.1146/annurev-genet-102108-134255
Mauve?: multiple alignment of conserved genomic sequence with rearrangements, Genome Res, vol.14, pp.1394-1403, 2004. ,
DOI : 10.1101/gr.2289704
URL : http://europepmc.org/articles/pmc442156?pdf=render
Provirophages and transpovirons as the diverse mobilome of giant viruses, Proc. Natl. Acad. Sci. U.S.A, vol.109, pp.18078-18083, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02007283
Virophages question the existence of satellites, Nat. Rev. Microbiol, vol.10, p.234, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02008680
Structural and mechanistic analyses reveal a unique Cas4-like protein in the mimivirus virophage resistance element system, vol.3, pp.1-10, 2018. ,
MUSCLE: a multiple sequence alignment method with reduced time and space complexity, BMC Bioinformatics, vol.5, p.113, 2004. ,
Giant virus with a remarkable complement of genes infects marine zooplankton, Proc. Natl. Acad. Sci. U.S.A, vol.107, pp.19508-19513, 2010. ,
Host genome integration and giant virus-induced reactivation of the virophage mavirus, Nature, vol.540, pp.288-291, 2016. ,
A virophage at the origin of large DNA transposons, Science, vol.332, pp.231-234, 2011. ,
Zamilon, a novel virophage with Mimiviridae host specificity, PLoS One, vol.9, p.94923, 2014. ,
DOI : 10.1371/journal.pone.0094923
URL : https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0094923&type=printable
Broad spectrum of mimiviridae virophage allows its isolation using a mimivirus reporter, PLoS One, vol.8, 2013. ,
Novel virophages discovered in a freshwater lake in China, Front. Microbiol, vol.7, p.5, 2016. ,
InterPro: the integrative protein signature database, Nucleic Acids Res, vol.37, pp.211-215, 2009. ,
DOI : 10.1093/nar/gkn785
URL : https://hal.archives-ouvertes.fr/hal-01214141
The Phyre2 web portal for protein modeling, prediction and analysis, Nat. Protoc, vol.10, pp.845-858, 2015. ,
DOI : 10.1038/nprot.2015.053
URL : https://www.nature.com/articles/nprot.2015.053.pdf
Circos: an information aesthetic for comparative genomics, Genome Res, vol.19, pp.1639-1645, 2009. ,
DOI : 10.1101/gr.092759.109
URL : http://europepmc.org/articles/pmc2752132?pdf=render
A giant virus in Amoebae, Science, vol.299, p.2033, 2003. ,
Tentative characterization of new environmental giant viruses by MALDI-TOF mass spectrometry, Intervirology, vol.53, pp.344-353, 2010. ,
Genus mimivirus in virus taxonomy, Virus Taxonomy, 1st Edn, pp.275-276, 2005. ,
The virophage as a unique parasite of the giant mimivirus, Nature, vol.455, pp.100-104, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00354651
Comparison of a modern and fossil pithovirus reveals its genetic conservation and evolution, Genome Biol. Evol, vol.8, pp.2333-2339, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01455587
MIMIVIRE is a defence system in mimivirus that confers resistance to virophage, Nature, vol.531, pp.249-252, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01306166
CD-Search: protein domain annotations on the fly, Nucleic Acids Res, vol.32, pp.327-331, 2004. ,
Experimental co-infection of Saccamoeba lacustris with Mimivirus-like Giant virus and a small Satellite virus, Endocytobiosis Cell Res. Exp, vol.29, pp.1-6, 2018. ,
Metagenomics reveals a novel virophage population in a Tibetan mountain lake, Microbes Environ, vol.31, pp.173-177, 2016. ,
mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus, Genome Res, vol.20, pp.664-674, 2010. ,
Inside the lifestyle of the virophage, Intervirology, vol.53, pp.293-303, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-02008664
The 1.2-megabase genome sequence of Mimivirus, Science, vol.306, pp.1344-1350, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-00651656
A simple method of estimating fifty percent endpoints, Am. J. Epidemiol, vol.27, pp.493-497, 1938. ,
Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products, J. Virol, vol.80, pp.11678-11685, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00165618
Faustovirus, an Asfarvirus-related new lineage of giant viruses infecting amoebae, J. Virol, vol.89, pp.6585-6594, 2015. ,
Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics, Nat. Commun, vol.8, p.858, 2017. ,
, , 2013.
, Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes, Proc. Natl. Acad. Sci. U.S.A, vol.110, pp.10800-10805
The HHpred interactive server for protein homology detection and structure prediction, Nucleic Acids Res, vol.33, pp.244-248, 2005. ,
Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods koichiro, Mol. Biol. Evol, vol.28, pp.2731-2739, 2011. ,
DOI : 10.1093/molbev/msr121
URL : https://academic.oup.com/mbe/article-pdf/28/10/2731/2954190/msr121.pdf
Evolutionary dynamics of giant viruses and their virophages, Ecol. Evol, vol.3, pp.2103-2115, 2013. ,
Virophage control of antarctic algal host-virus dynamics, Proc. Natl. Acad. Sci. U.S.A, vol.108, pp.6163-6168, 2011. ,
Related giant viruses in distant locations and different close to the megavirus lineage, Genome Biol. Evol, vol.4, 2012. ,
A new family of hybrid virophages from an animal gut metagenome, Biol. Direct, vol.10, pp.1-9, 2015. ,
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms, Proc. Natl. Acad. Sci. U.S.A, vol.106, pp.21848-21853, 2009. ,
Virophages, polintons, and transpovirons?: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies, Virol. J, vol.10, p.1, 2013. ,
Three novel virophage genomes discovered from yellowstone lake metagenomes, J. Virol, vol.89, pp.1278-1285, 2015. ,
DOI : 10.1128/jvi.03039-14
URL : https://jvi.asm.org/content/jvi/89/2/1278.full.pdf
Diversity of virophages in metagenomic data sets, J. Virol, vol.87, pp.4225-4236, 2013. ,