Context-based features enhance protein secondary structure prediction accuracy, J Chem Inf Model, vol.54, pp.992-1002, 2014. ,
PaleAle 4.0: high-accuracy prediction of protein secondary structure and relative solvent accessibility, Bioinformatics, vol.29, pp.2056-2064, 2013. ,
Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection, PLoS One, vol.9, p.95275, 2014. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01060276
On pairwise distances and median score of three genomes under DCJ, BMC Bioinformatics, vol.13, p.1, 2012. ,
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution, Genome Res, vol.13, pp.2229-2264, 2003. ,
Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes, Nucleic Acids Res, vol.35, p.7, 2007. ,
Discovering short linear protein motif based on selective training of profile hidden Markov models, J Theor Biol, vol.377, pp.75-84, 2015. ,
BEACON: automated tool for bacterial GEnome annotation ComparisON, BMC Genomics, vol.16, p.616, 2015. ,
GenoMatrix: a software package for pedigreebased and genomic prediction analyses on complex traits, J Hered, vol.107, pp.372-381, 2016. ,
Annotation Enrichment Analysis: An Alternative Method for Evaluating the Functional Properties of, Gene Sets. Sci. Rep, vol.4, p.4191, 2014. ,
Software for computing and annotating genomic ranges, PLoS Comput Biol, vol.9, p.1003118, 2013. ,
Integrated Comparison Of GWAS, transcriptome, and proteomics studies highlights similarities in the biological basis of animal and human MyopiaIntegrated comparison of myopia omics studies, Invest Ophthalmol Vis Sci, vol.58, pp.660-669, 2017. ,
diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates, PLoS One, vol.8, p.65598, 2013. ,
BEDTools: the Swiss-Army tool for genome feature analysis, Curr Protoc Bioinforma, vol.47, pp.11-12, 2014. ,
A Foundation For analysis in Health Sciences, pp.22-23, 2013. ,
Estimation of unemployment duration from grouped data: a comparative study, J Labor Econ, vol.3, pp.153-74, 1985. ,
HH-MOTiF: de novo detection of short linear motifs in proteins by hidden Markov model comparisons, Nucleic Acids Res, vol.45, pp.470-477, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01692042
NestedMICA as an ab initio protein motif discovery tool, BMC Bioinformatics, vol.9, p.19, 2008. ,
ELM 2016-data update and new functionality of the eukaryotic linear motif resource, Nucleic Acids Res, vol.44, pp.294-300, 2016. ,
Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis ,
, Genome Res, vol.15, pp.1336-1379, 2005.
A manual curation strategy to improve genome annotation: application to a set of Haloarchael genomes, Life, vol.5, pp.1427-1471, 2015. ,
, Nucleic Acids Res, vol.44, pp.67-72, 2016.
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation, Nucleic Acids Res, vol.44, pp.733-778, 2016. ,
Database resources of the National Center for biotechnology information, Nucleic Acids Res, vol.42, pp.7-17, 2014. ,
FlyBase: introduction of the Drosophila Melanogaster release 6 reference genome assembly and large-scale migration of genome annotations, Nucleic Acids Res, vol.43, pp.690-697, 2015. ,
Time series methods for obtaining excess mortality attributable to influenza epidemics, Stat Methods Med Res, vol.20, pp.331-376, 2011. ,
Victimization from workplace bullying after a traumatic event: time-lagged relationships with symptoms of posttraumatic stress, Int Arch Occup Environ Health, vol.90, pp.411-432, 2017. ,
UniProt: the universal protein knowledgebase, Nucleic Acids Res, vol.45, pp.158-69, 2017. ,
SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins, PLoS One, vol.2, p.967, 2007. ,
MEME: discovering and analyzing DNA and protein sequence motifs, Nucleic Acids Res, vol.34, pp.369-73, 2006. ,