C. J. Murray, K. F. Ortblad, and C. Guinovart, Global, regional and national incidence and mortality for HIV, tuberculosis and malaria during 1990-2013: a systematic analysis for the global burden of disease study, Lancet, vol.384, pp.1005-70, 2014.

, Disease burden and mortality estimates. cause specific mortality, 2000.

D. Raoult and P. Parola, Vaccination against the big three killers: an illusion?, Clin Microbiol Infect, vol.25, pp.654-659, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02202575

A. Ogbonna and C. J. Uneke, Artemisinin-based combination therapy for uncomplicated malaria in sub-Saharan Africa: the efficacy, safety, resistance and policy implementation since Abuja, Trans R Soc Trop Med Hyg, vol.102, pp.621-628, 2000.

S. J. Ceesay, C. Casals-pascual, and J. Erskine, Changes in malaria indices between 1999 and 2007 in The Gambia: a retrospective analysis, Lancet, vol.372, pp.1545-54, 2008.

P. Parola and D. Raoult, Vers la microbiologie du e siècle en Afrique, Med Sante Trop, vol.29, pp.340-342, 2019.

C. Sokhna, O. Gaye, and O. Doumbo, Developing Research in Infectious and Tropical Diseases in Africa: The Paradigm of Senegal, Clin Infect Dis, vol.65, issue.1, pp.64-73, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01730974

J. F. Trape, A. Tall, and C. Sokhna, The rise and fall of malaria in a west African rural community, Dielmo, Senegal, from 1990 to 2012: a 22 year longitudinal study, Lancet Infect Dis, vol.14, pp.476-88, 2014.

V. Delaunay, A. Desclaux, and C. Sokhna,

, Niakhar, mémoires et perspectives. Recherches pluridisciplinaires sur le changement en

A. Marseille, A. N. Dakar-;-wotodjo, V. Richard, and S. Boyer, The implication of long-lasting insecticide-treated net use in the resurgence of malaria morbidity in a Senegal malaria endemic village in, Editions de l'IRD et L'Harmattan Sénégal, pp.2010-2011, 2018.

, Parasit, Vectors, vol.8, p.267, 2015.

A. N. Wotodjo, S. Doucoure, and J. Gaudart, Malaria in Dielmo, a Senegal village: Is its elimination possible after seven years of implementation of long-lasting insecticide-treated nets?, PLoS One, vol.12, p.179528, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01563226

A. N. Wotodjo, N. Diagne, and J. Gaudart, Malaria risk factors in Dielmo, a Senegalese malaria-endemic village, American Journal of Tropical Medicine and Hygiene, vol.92, pp.565-573, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01307152

S. Sougoufara, M. Harry, and S. Doucouré, Shift in species composition in the Anpheles gambiae complex after implementation of longlasting insecticidal nets in Dielmo, Senegal. Med Vet Entomol, vol.30, pp.365-373, 2016.

S. Sougoufara, O. Thiaw, and A. Cailleau, The Impact of Periodic Distribution Campaigns of Long-Lasting Insecticidal-Treated Bed Nets on Malaria Vector Dynamics and Human Exposure in Dielmo, Senegal, Am J Trop Med Hyg, vol.98, pp.1343-52, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01826774

S. Sougoufara, S. Doucouré, and S. Mb, Challenges for malaria vector control in sub-Saharan Africa: Resistance and behavioral adaptations in Anopheles populations, J Vector Borne Dis, vol.54, pp.4-15, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01521231

O. Thiaw, S. Doucouré, and S. Sougoufara, Investigating insecticide resistance and knockdown resistance (kdr) mutation in Dielmo, Senegal, an area under long lasting insecticidaltreated nets universal coverage for 10 years, Malar J, vol.17, p.123, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01780669

A. N. Wotodjo, J. F. Trape, and V. Richard, No Difference in the Incidence of Malaria in Human-Landing Mosquito Catch Collectors and Non-Collectors in a Senegalese Village with Endemic Malaria, PLoS ONE, vol.10, p.126187, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01211718

E. Niang, H. Bassene, and P. Makoundou, First report of natural Wolbachia infection in wild Anopheles funestus population in Senegal
URL : https://hal.archives-ouvertes.fr/hal-01943873

, Malar J, vol.17, p.408, 2018.

H. Bassene, E. Niang, and F. Fenollar, A pilot study on isolation of Asaia and detecting its copresence with Plasmodium falciparum in two major malaria vectors in Senegal, J Parasitol Vector Biol, vol.11, pp.1-9, 2018.

E. Niang, H. Bassene, and . Fenollar, Biological Control of Mosquito-Borne Diseases: The Potential of Wolbachia-Based Interventions in an IVM Framework, Journal of Tropical Medicine, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01948082

S. Sougoufara, S. M. Diedhiou, and S. Doucouré, Biting by Anopheles funestus in broad daylight after use of long-lasting insecticidal nets: a new challenge to malaria elimination, Malaria Journal, vol.13, p.125, 2014.

, Roll Back Malaria : Focus on Senegal, Progress, Impact Series, 2010.

C. Sokhna, O. Mediannikov, and F. Fenollar, Point-of-care laboratory of pathogen diagnosis in rural Senegal, PLoS Negl Trop Dis, vol.7, p.1999, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01785748

O. Mediannikov, C. Socolovschi, and M. Million, Molecular Identification of Pathogenic Bacteria in Eschars from Acute Febrile Patients, Senegal. The American Journal of Tropical Medicine and Hygiene, vol.91, pp.1015-1024, 2014.

O. Mediannikov, G. Diatta, and F. Fenollar, Tick-borne rickettsioses, neglected emerging diseases in rural Senegal, PLoS Negl Trop Dis, vol.4, 2010.

C. Socolvschi, O. Mediannikov, and C. Sokhna, Rickettsia felis-associated uneruptive fever

. Senegal, Emerging Infectious Diseases, vol.16, pp.1140-77, 2010.

H. Elbir, M. Henry, and G. Diatta, Multiplex Real-Time PCR Diagnostic of Relapsing Fevers in Africa, PLoS Neglected Tropical Diseases, vol.7, p.2042, 2013.

O. Mediannikov, C. Socolovschi, and H. Bassene, Borrelia crocidurae infection in acutely febrile patients, Senegal. Emerg Infect Dis, vol.20, pp.1335-1343, 2014.

P. Parola, G. Diatta, and C. Socolovschi, Tickborne relapsing fever borreliosis, rural senegal, Emerg Infect Dis, vol.17, pp.883-888, 2011.

O. Mediannikov, F. Fenollar, and C. Socolovschi, Coxiella burnetii in humans and ticks in rural Senegal, PLoS Negl Trop Dis, vol.4, p.654, 2010.

E. Angelakis, O. Mediannikov, and C. Socolovschi, Coxiella burnetii-positive PCR in febrile patients in rural and urban Africa, Int J Infect Dis, vol.28, pp.107-117, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01774657

P. Ratmanov, H. Bassene, and F. Fenollar, The Correlation of Q Fever and Coxiella burnetii DNA in Household Environments in Rural Senegal, Vector-Borne Zoonotic Dis, vol.13, pp.70-72, 2013.

F. Fenollar, O. Mediannikov, and C. Socolovschi, Tropheryma whipplei bacteremia during fever in rural West Africa, Clin Infect Dis, vol.51, pp.515-536, 2010.

H. Bassene, O. Mediannikov, and C. Socolovschi, Tropheryma whipplei as a cause of epidemic fever, Emerg Infect Dis, vol.22, pp.1229-334, 2010.
URL : https://hal.archives-ouvertes.fr/hal-01465137

A. K. Keita, O. Mediannikov, and P. Ratmanov, Looking for Tropheryma whipplei source and reservoir in rural Senegal, Am J Trop Med Hyg, vol.88, pp.339-382, 2013.

A. K. Keita, H. Bassene, and A. Tall, Tropheryma whipplei: A common bacterium in rural senegal, PLoS Negl Trop Dis, vol.5, pp.1-9, 2011.

G. Diatta, O. Mediannikov, and C. Sokhna, Prevalence of Bartonella quintana in patients with fever and head lice from rural areas of Sine-Saloum, Senegal, Am J Trop Med Hyg, vol.91, pp.291-294, 2014.

O. Mediannikov, J. F. Trape, and G. Diatta, Rickettsia africae, Western Africa, Emerg Infect Dis, vol.16, pp.571-574, 2010.

C. Roucher, O. Mediannikov, G. Diatta, J. Trape, and D. Raoult, A new Rickettsia species found in fleas collected from human dwellings and from domestic cats and dogs in Senegal, Vector Borne Zoonotic Dis, vol.12, pp.360-365, 2012.

C. Abat, P. Colson, and H. Chaudet, Implementation of Syndromic Surveillance Systems in Two Rural Villages in Senegal, PLoS Negl Trop Dis, vol.10, p.5212, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01474346

E. Chabriere, H. Bassène, M. Drancourt, and C. Sokhna, Maldi-TOF MS and point of care are disruptive diagnostic tools in Africa, New Microbes New Infect, vol.26, pp.83-88, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02101098

P. Seng, J. M. Rolain, and P. E. Fournier, Maldi-TOFmass spectrometry applications in clinical microbiology, Future microbiology, vol.5, pp.1733-54, 2010.

B. Fall, C. I. Lo, and B. Samb-ba, The ongoing revolution of Maldi-TOF mass spectrometry for microbiology reaches tropical Africa, Am J Trop Med Hyg, vol.92, issue.3, pp.641-648, 2015.

C. I. Lo, B. Fall, and B. Sambe-ba, Maldi-TOF Mass Spectrometry: A Powerful Tool for Clinical Microbiology at Hopital Principal de Dakar, Senegal (West Africa), PLoS One, vol.10, p.145889, 2015.

D. Sow, B. Fall, and M. Ndiaye, Usefulness of Maldi-TOF Mass Spectrometry for Routine Identification of Candida Species in a Resource-Poor Setting, Mycopathologia, vol.180, pp.173-182, 2015.

M. Laroche, J. M. Bérenger, P. Delaunay, R. Charrel, B. Pradines et al., Medical Entomology: A Reemerging Field of Research to Better Understand Vector-Borne Infectious Diseases, Clin Infect Dis, vol.65, pp.30-38, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01730979

M. Sambou, M. Aubadie-ladrix, and F. Fenollar, Comparison of matrix-assisted laser desorption ionization-time of flight mass spectrometry and molecular biology techniques for identification of Culicoides (Diptera: ceratopogonidae) biting midges in senegal, J Clin Microbiol, vol.53, pp.410-418, 2015.

G. Diatta, O. Mediannikov, and S. Boyer, An alternative strategy of preventive control of tickborne relapsing fever in rural areas of Sine-Saloum, Senegal, Am J Trop Med Hyg, vol.3, pp.537-582, 2016.
URL : https://hal.archives-ouvertes.fr/inserm-01994507

C. Sokhna, L. Hesran, J. Y. Mbaye, and P. A. , Increase of malaria attacks among children presenting concomittant infection by Schistosoma Mansoni in Senegal, Malaria Journal, vol.3, p.43, 2004.

R. C. Tine, B. Faye, and J. L. Ndiaye, Coinfection paludisme bilharziose urinaire chez les enfants d'âge scolaire en zone rurale sénégalaise, Enzyme Microbiol Tech, vol.41, pp.112-116, 2011.

B. Senghor, A. Diallo, and S. N. Sylla, Prevalence and intensity of urinary schistosomiasis among school children in the district of Niakhar, region of Fatick, Senegal. Parasit Vectors, vol.7, p.5, 2014.
URL : https://hal.archives-ouvertes.fr/inserm-00924502

B. Senghor, O. T. Diaw, and D. , Study of the snail intermediate hosts of urogenital schistosomiasis in Niakhar, region of Fatick, West central Senegal, Parasit Vectors, vol.8, p.410, 2015.

B. Senghor, O. T. Diaw, and S. Doucoure, Efficacy of praziquantel against urinary schistosomiasis and reinfection in Senegalese school children where there is a single well-defined transmission period, Parasit Vectors, vol.8, p.362, 2015.

B. Senghor, O. T. Diaw, and S. Doucoure, Impact of annual Praziquantel treatment on urogenital Schistosomiasis in a seasonal transmission focus in Central Senegal, PLoS Negl Trop Dis, vol.10, p.4557, 2016.

J. C. Lagier, N. Diagne, F. Fenollar, C. Tamalet, C. Sokhna et al., Vaginal self-sampling as a diagnosis tool in low-income countries and potential applications for exploring the infectious causes of miscarriage, Future Microbiol, vol.12, pp.609-629, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01573732

N. S. Fall, C. Tamalet, and N. Diagne, Feasibility, Acceptability, and Accuracy of Vaginal Self-Sampling for Screening Human Papillomavirus Types in Women from Rural Areas in Senegal, Am J Trop Med Hyg, vol.100, pp.1552-1557, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02159292

C. Ndiaye, H. Bassene, J. C. Lagier, D. Raoult, and C. Sokhna, Asymptomatic carriage of Streptococcus pneumoniae detected by qPCR on the palm of hands of populations in rural Senegal, PLoS Negl Trop Dis, vol.12, p.6945, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02000514

J. C. Lagier, G. Dubourg, and M. Million, Culturing the human microbiota and culturomics, Nat Rev Microbiol, vol.16, pp.540-50, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01910305

M. Tidjani-alou and M. Million, Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?, Front Microbiol, vol.8, p.899, 2017.

S. I. Traore, M. Bilen, and F. Cadoret, Communicable and non-communicable disease risks at the Grand Magal of Touba: The largest mass gathering in Senegal, Travel Med Infect Dis, vol.29, issue.17, pp.30127-30135, 2017.

C. Sokhna, N. Goumbala, and P. Gautret, The Grand Magal of Touba in the time of dengue outbreak in Senegal, Travel Med Infect Dis, vol.28, pp.107-115, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02263689

V. T. Hoang, N. Goumbala, D. Tlanh-ly, and T. D. , Respiratory and Gastrointestinal infections at the 2017 Grand Magal de Touba, Senegal: A prospective cohort survey, Travel Med Infect Dis, p.101410, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02389087

D. Raoult, Technology-driven research will dominate hypothesis-driven research: the future of microbiology, Future Microbiol, vol.5, pp.135-142, 2010.

B. Cissé, C. Ndaf, and A. A. Hane, Institut de Recherche en Santé, de Surveillance E´pidémio-logique et de Formations de Diamniadio (Iressef) : la vision d'un homme et un pari sur l'avenir, Med Santé Trop, vol.29, pp.348-53, 2019.