The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches, GigaScience, vol.8, 2019. ,
Gut microbiota in health and disease, Physiol Rev, vol.90, pp.859-904, 2010. ,
Fecal Microbiota Transplantation for the Management of Clostridium difficile Infection, Infect Dis Clin North Am, vol.29, pp.109-122, 2015. ,
Diversity of the Human Intestinal Microbial Flora, Science, vol.308, pp.1635-1638, 2005. ,
The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota, Clin Microbiol Rev, vol.28, pp.237-264, 2015. ,
Microbial culturomics: paradigm shift in the human gut microbiome study, Clin Microbiol Infect Off Publ Eur Soc Clin Microbiol Infect Dis, vol.18, pp.1185-1193, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01478655
Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics, Int J Antimicrob Agents, vol.44, pp.117-124, 2014. ,
Culture of previously uncultured members of the human gut microbiota by culturomics, Nat Microbiol, vol.1, p.16203, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01453324
The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species. Microbiome, vol.6, p.29793532, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01858939
Early Fecal Microbiota Transplantation Improves Survival in Severe Clostridium difficile Infections, Clin Infect Dis Off Publ Infect Dis Soc Am, vol.66, pp.645-650, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01780637
Fecal microbiota transplantation shortens the colonization period and allows the re-entry of patients carrying carbapenamase-producing bacteria into medical care facilities, Int J Antimicrob Agents, 2018. ,
Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry, Clin Infect Dis Off Publ Infect Dis Soc Am, vol.49, pp.543-551, 2009. ,
Culturing of "unculturable" human microbiota reveals novel taxa and extensive sporulation, Nature, vol.533, pp.543-546, 2016. ,
Isolation and culture of Methanobrevibacter smithii by co-culture with hydrogen-producing bacteria on agar plates, Clin Microbiol Infect Off Publ Eur Soc Clin Microbiol Infect Dis, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02202491
Complementarity between targeted real-time specific PCR and conventional broad-range 16S rDNA PCR in the syndrome-driven diagnosis of infectious diseases, Eur J Clin Microbiol Infect Dis Off Publ Eur Soc Clin Microbiol, vol.34, p.25348607, 2015. ,
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes, Int J Syst Evol Microbiol, vol.64, p.24505072, 2014. ,
From culturomics to taxonomogenomics: A need to change the taxonomy of prokaryotes in clinical microbiology, Anaerobe, vol.36, pp.73-78, 2015. ,
PANDAseq: paired-end assembler for illumina sequences, BMC Bioinformatics, vol.13, p.31, 2012. ,
QIIME allows analysis of high-throughput community sequencing data, Nat Methods, vol.7, pp.335-336, 2010. ,
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities, BMC Biol, vol.7, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00484166
Microbacterium lemovicicum sp. nov., a bacterium isolated from a natural uranium-rich soil, Int J Syst Evol Microbiol, vol.63, p.23264499, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01561095
Midgut microbiota of the malaria mosquito vector Anopheles gambiae and interactions with Plasmodium falciparum infection, PLoS Pathog, vol.8, p.1002742, 2012. ,
Basic local alignment search tool, J Mol Biol, vol.215, pp.403-410, 1990. ,
Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing, BMC Microbiol, vol.18, p.30355340, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01924104
The proof of concept that culturomics can be superior to metagenomics to study atypical stool samples, Eur J Clin Microbiol Infect Dis Off Publ Eur Soc Clin Microbiol, vol.32, p.23430196, 2013. ,
Schrö dinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems, Microbiome, vol.5, p.28810907, 2017. ,
A hidden pitfall in the preparation of agar media undermines microorganism cultivability, Appl Environ Microbiol, vol.80, pp.7659-7666, 2014. ,
Isolation of Previously Uncultured Slow-Growing Bacteria by Using a Simple Modification in the Preparation of Agar Media, Appl Environ Microbiol, vol.84, 2018. ,
Cultivation-success of rare soil bacteria is not influenced by incubation time and growth medium, PloS One, vol.14, p.210073, 2019. ,