Acidification increases abundances of Vibrionales and Planctomycetia associated to a seaweed-grazer system: potential consequences for disease and prey digestion efficiency, PeerJ, vol.6, p.4377, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01774858
Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea, BMC Microbiol, vol.10, p.261, 2010. ,
The marine bacterium Leucothrix mucor as an algal epiphyte, Mar. Biol, vol.23, pp.283-292, 1973. ,
Natural fumigation as a mechanism for volatile transport between flower organs, Nat. Chem. Biol, vol.15, pp.583-588, 2019. ,
Climate change and disease: bleaching of a chemically defended seaweed, Glob. Chang. Biol, vol.17, pp.2958-2970, 2011. ,
Temperature induced bacterial virulence and bleaching disease in a chemically defended marine macroalga, Environ. Microbiol, vol.13, pp.529-537, 2011. ,
Shear stress as a major driver of marine biofilm communities, Front. Microbiol, vol.10, p.1768, 2019. ,
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis, Nucleic Acids Res, vol.46, pp.486-494, 2018. ,
Changes in bacterioplankton communities resulting from direct and indirect interactions with trace metal gradients in an urbanized marine coastal area, Front. Microbiol, vol.10, p.257, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02049263
Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes, Nat. Rev. Microbiol, vol.9, pp.849-859, 2011. ,
High-resolution lipidomics of the early life stages of the red seaweed Porphyra dioica, Molecules, vol.23, p.187, 2018. ,
Microbial surface colonization and biofilm development in marine environments. Microbiol, Mol. Biol. Rev, vol.80, pp.91-138, 2016. ,
, Statistical Procedures for Agricultural Research, 2019.
Betaine ether-linked glycerolipids: chemistry and biology, Prog. Lipid Res, vol.35, pp.1-51, 1996. ,
eRah: a computational tool integrating spectral deconvolution and alignment with quantification and identification of metabolites in GC/MS-based metabolomics, Anal. Chem, vol.88, pp.9821-9829, 2016. ,
The ade4 package: implementing the duality diagram for ecologists, J. Statist. Softw, vol.22, pp.1-20, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00434575
The seaweed holobiont: understanding seaweed-bacteria interactions, FEMS Microbiol. Rev, vol.37, pp.462-476, 2013. ,
FROGS: find, rapidly, OTUs with galaxy solution, Bioinformatics, vol.34, pp.1287-1294, 2018. ,
CoNet app: inference of biological association networks using Cytoscape, vol.5, p.1519, 1000. ,
Biofilms: an emergent form of bacterial life, Nat. Rev. Microbiol, vol.14, pp.563-575, 2016. ,
High metabolic variation for seaweeds in response to environmental changes: a case study of the brown algae Lobophora in coral reefs, Sci. Rep, vol.9, p.993, 2019. ,
Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics, Bioinformatics, vol.31, pp.1493-1495, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01214152
Evolutionary evidence of algal polysaccharide degradation acquisition by Pseudoalteromonas carrageenovora 9T to adapt to macroalgal niches, Front. Microbiol, vol.9, p.2740, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01944299
What we can learn from sushi: a review on seaweed-bacterial associations, FEMS Microbiol. Ecol, vol.83, pp.1-16, 2013. ,
Volatile organic compound mediated interactions at the plant-microbe interface, J. Chem. Ecol, vol.39, pp.810-825, 2013. ,
Dimethylsulphoniopropionate (DMSP) accumulation in green macioalgae from polar to temperate regions: interactive effects of light versus salinity and light versus temperature, Polar Biol, vol.12, pp.603-607, 1992. ,
, , 2018.
, Macroalgal-bacterial interactions: Role of dimethylsulfoniopropionate in microbial gardening by Ulva (Chlorophyta), Mol. Ecol, vol.27, pp.1808-1819
Compounds associated with algal surfaces mediate epiphytic colonization of the marine macroalga Fucus vesiculosus, FEMS Microbiol. Ecol, vol.84, pp.411-420, 2013. ,
Alternate life history phases of a common seaweed have distinct microbial surface communities, Mol. Ecol, vol.27, pp.3555-3568, 2018. ,
Sympatric kelp species share a large portion of their surface bacterial communities, Environ. Microbiol, vol.20, pp.658-670, 2018. ,
Simultaneous structural identification of diacylglyceryl-N-trimethylhomoserine (DGTS) and diacylglycerylhydroxymethyl-N,N,N-trimethyl-?-alanine (DGTA) in microalgae using dual Li+/H+ adduct ion mode by ultra-performance liquid chromatography/quadrupole time-of-flight mass spectrometry, Rapid Commun. Mass Spectrom, vol.31, pp.457-468, 2017. ,
Membrane lipids in plant-associated bacteria: their biosyntheses and possible functions, Mol. Plant Microbe Interact, vol.16, pp.567-579, 2003. ,
Spatial and temporal variation in DMSP content in the invasive seaweed Codium fragile ssp. fragile: effects of temperature, light and grazing, Mar. Ecol. Prog. Ser, vol.417, pp.51-61, 2010. ,
Swarm: robust and fast clustering method for amplicon-based studies, PeerJ, vol.2, p.593, 2014. ,
Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography, Environ. Microbiol, vol.17, pp.4078-4088, 2015. ,
Coastal urbanisation affects microbial communities on a dominant marine holobiont, NPJ Biofilms Microb, vol.4, p.1, 2018. ,
Chemical mediation of bacterial surface colonisation by secondary metabolites from the red alga Delisea pulchra, Aquat. Microb. Ecol, vol.15, pp.233-246, 1998. ,
The distribution of secondary compounds within plants, Herbivores, their Interaction with Secondary Plant Metabolites, pp.55-134, 1979. ,
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data, PLoS One, vol.8, p.61217, 2013. ,
Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption, PLoS One, vol.13, p.192772, 2018. ,
Disentangling the influence of environment, host specificity and thallus differentiation on bacterial communities in siphonous green seaweeds, Front. Microbiol, vol.10, p.717, 2019. ,
The red alga Bonnemaisonia asparagoides regulates epiphytic bacterial abundance and community composition by chemical defence, FEMS Microbiol. Ecol, vol.71, pp.84-93, 2010. ,
Surface metabolites of the brown alga Taonia atomaria have the ability to regulate epibiosis, Biofouling, vol.32, pp.801-813, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01760097
Settlement inhibition of marine biofilm bacteria and barnacle larvae by compounds isolated from the Mediterranean brown alga Taonia atomaria, J. Appl. Phycol, vol.28, pp.1975-1986, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01878463
Temporal covariation of epibacterial community and surface metabolome in the Mediterranean seaweed holobiont Taonia atomaria, Environ. Microbiol, vol.21, pp.3346-3363, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02458311
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples, Environ. Microbiol, vol.18, pp.1403-1414, 2016. ,
Mapping the surface microbiome and metabolome of brown seaweed Fucus vesiculosus by amplicon sequencing, integrated metabolomics and imaging techniques, Sci. Rep, vol.9, p.1061, 2019. ,
Prokaryotic community successions and interactions in marine biofilms: the key role of Flavobacteriia, FEMS Microbiol. Ecol, vol.94, p.83, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02024255
Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp, Proc. R. Soc. B Biol. Sci, vol.286, 2019. ,
Observations on the development of Taonia atomaria, Ag. Ann. Bot, vol.46, 1932. ,
Betaine lipids in chlorarachniophytes, Phycol. Res, vol.58, pp.298-305, 2010. ,
VSEARCH: a versatile open source tool for metagenomics, PeerJ, vol.4, p.2584, 2016. ,
Dimethylsulphopropionate (DMSP) and proline from the surface of the brown alga Fucus vesiculosus inhibit bacterial attachment, Biofouling, vol.28, pp.593-604, 2012. ,
Surface-associated fucoxanthin mediates settlement of bacterial epiphytes on the rockweed Fucus vesiculosus, Biofouling, vol.27, pp.423-433, 2011. ,
Defence chemistry modulation by light and temperature shifts and the resulting effects on associated epibacteria of Fucus vesiculosus, PLoS One, vol.9, p.105333, 2014. ,
The role of fishes in the organization of a Mediterranean sublittoral community: I: Algal communities, J. Exp. Mar. Biol. Ecol, vol.212, pp.25-44, 1997. ,
Summer shifts of bacterial communities associated with the invasive brown seaweed Sargassum muticum are location and tissue dependent, PLoS One, vol.13, p.206734, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02364728
Advantages of phylogenetic distance based constrained ordination analyses for the examination of microbial communities, Sci. Rep, vol.7, p.6481, 2017. ,
Crustose coralline algal species host distinct bacterial assemblages on their surfaces, ISME J, vol.9, pp.2527-2536, 2015. ,
Bacterial membrane lipids: diversity in structures and pathways, FEMS Microbiol. Rev, vol.40, pp.133-159, 2016. ,
Temperature-driven shifts in the epibiotic bacterial community composition of the brown macroalga Fucus vesiculosus, vol.2, pp.338-349, 2013. ,
Salinity affects compositional traits of epibacterial communities on the brown macroalga Fucus vesiculosus, FEMS Microbiol. Ecol, vol.88, pp.272-279, 2014. ,
An antioxidant function for DMSP and DMS in marine algae, Nature, vol.418, pp.317-320, 2002. ,
A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography, J. Chromatogr. A, vol.11, p.80947, 1963. ,
Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?, Freshw. Sci, vol.36, pp.162-177, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01606868
The second skin: ecological role of epibiotic biofilms on marine organisms, Front. Microbiol, vol.3, p.292, 2012. ,
Sharing and community curation of mass spectrometry data with global natural products social molecular networking, Nat. Biotechnol, vol.34, pp.828-837, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01371824
Role of chemical mediators in aquatic interactions across the prokaryote-eukaryote boundary, J. Chem. Ecol, vol.44, pp.1008-1021, 2018. ,
The green seaweed Ulva: a model system to study morphogenesis, Front. Plant Sci, vol.6, p.72, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01224210
Geographic variation in halogenated furanones from the red alga Delisea pulchra and associated herbivores and epiphytes, Mar. Ecol. Prog. Ser, vol.207, pp.227-241, 2000. ,
Enhancing air retention by biomimicking Salvinia molesta structures, Jpn. J. Appl. Phys, vol.52, pp.6-08, 2013. ,
Isolation and characterization of a novel marine Bacteroidetes as Algitalea ulvae gen. nov., sp. nov., isolated from the green alga Ulva pertusa, Antonie van Leeuwenhoek, vol.108, pp.505-513, 2015. ,
The major changes in lipid composition of Sargassum horneri during different growth phases, J. Appl. Phycol, vol.30, pp.517-523, 2018. ,
Effects of temperature stress and aquarium conditions on the red macroalga Delisea pulchra and its associated microbial community, Front. Microbiol, vol.7, p.161, 2016. ,