Practical limitations of superresolution imaging due to conventional sample preparation revealed by a direct comparison of CLSM, SIM and dSTORM, J. Microsc, vol.262, pp.306-315, 2015. ,
Biological insight from super-resolution microscopy: what we can learn from localization-based images, Annu. Rev. Biochem, vol.87, pp.965-989, 2018. ,
Blinking fluorophores: what do they tell us about protein dynamics?, Biochem. Soc. Trans, vol.34, pp.979-982, 2006. ,
Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes. Sci, vol.355, pp.606-612, 2017. ,
Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction, Nat. Methods, vol.16, pp.1215-1225, 2019. ,
Imaging intracellular fluorescent proteins at nanometer resolution, Science, vol.313, pp.1642-1645, 2006. ,
Stimulated emission depletion microscopy, Chem. Rev, vol.117, pp.7377-7427, 2017. ,
Two-colour live-cell nanoscale imaging of intracellular targets, Nat. Commun, vol.7, p.10778, 2016. ,
, , 2014.
, A contractile and counterbalancing adhesion system controls the 3D shape of crawling cells, J. Cell Biol, vol.205, pp.83-96
Superresolution expansion microscopy reveals the threedimensional organization of the Drosophila synaptonemal complex, Proc. Natl. Acad. Sci. USA, vol.114, pp.6857-6866, 2017. ,
Nanoscale dynamism of actin enables secretory function in cytolytic cells, Curr. Biol, vol.28, pp.489-502, 2018. ,
ZeroCostDL4Mic: an open platform to simplify access and use of Deep-Learning in Microscopy, 2020. ,
Iterative expansion microscopy, Nat. Methods, vol.14, pp.593-599, 2017. ,
Lattice lightsheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution, Science, vol.346, p.1257998, 2014. ,
Expansion microscopy, Science, vol.347, pp.543-548, 2015. ,
Nanoscale imaging of RNA with expansion microscopy, Nat. Methods, vol.13, pp.679-684, 2016. ,
Expansion microscopy with conventional antibodies and fluorescent proteins, Nat. Methods, vol.13, pp.485-488, 2016. ,
Fluorescence microscopy: a concise guide to current imaging methods, Curr. Protoc. Neurosci, vol.79, 2017. ,
Real time multi-modal super-resolution microscopy through Super-Resolution Radial Fluctuations (SRRF-Stream), Single Molecule Spectroscopy and Superresolution Imaging XII, p.1088418, 2019. ,
SRRF: Universal live-cell super-resolution microscopy, Int. J. Biochem. Cell Biol, vol.101, pp.74-79, 2018. ,
Quantitative mapping and minimization of superresolution optical imaging artifacts, Nat. Methods, vol.15, pp.263-266, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01736919
Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy, J. Biomed. Opt, vol.17, p.126008, 2012. ,
Strategic and practical guidelines for successful structured illumination microscopy, Nat. Protoc, vol.12, pp.988-1010, 2017. ,
Evaluation of fluorophores for optimal performance in localization-based superresolution imaging, Nat. Methods, vol.8, pp.1027-1036, 2011. ,
Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI), Proc. Natl. Acad. Sci. USA, vol.106, pp.22287-22292, 2009. ,
STED nanoscopy reveals the ubiquity of subcortical cytoskeleton periodicity in living neurons, Cell Reports, vol.10, pp.1246-1251, 2015. ,
Three-dimensional localization of single molecules for super-resolution imaging and single-particle tracking, Chem. Rev, vol.117, pp.7244-7275, 2017. ,
Time-lapse two-color 3D imaging of live cells with doubled resolution using structured illumination, Proc. Natl. Acad. Sci. USA, vol.109, pp.5311-5315, 2012. ,
Fluorescence nanoscopy by ground-state depletion and single-molecule return, Nat. Methods, vol.5, pp.943-945, 2008. ,
Expansion microscopy of zebrafish for neuroscience and developmental biology studies, Proc. Natl. Acad. Sci. USA, vol.114, pp.10799-10808, 2017. ,
Live-cell microscopy -tips and tools, J. Cell Sci, vol.122, pp.753-767, 2009. ,
Expansion stimulated emission depletion microscopy (ExSTED), Acs Nano, vol.12, pp.4178-4185, 2018. ,
Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution, Science, vol.363, p.8302, 2019. ,
Coaligned dual-channel STED nanoscopy and molecular diffusion analysis at 20 nm resolution, Biophys. J, vol.105, pp.1-03, 2013. ,
, , 2011.
, Diffraction-unlimited all-optical imaging and writing with a photochromic GFP, Nature, vol.478, pp.204-208
Visualizing intracellular organelle and cytoskeletal interactions at nanoscale resolution on millisecond timescales, Cell, vol.175, pp.1430-1442, 2018. ,
Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. SHORT COMMUNICATION, J. Microsc, vol.198, pp.82-87, 2000. ,
Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination, Biophys. J, vol.94, pp.4957-4970, 2008. ,
Fast live-cell conventional fluorophore nanoscopy with ImageJ through super-resolution radial fluctuations, Nat. Commun, vol.7, p.12471, 2016. ,
MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells, Nat. Methods, vol.17, pp.217-224, 2020. ,
Hybrid structured illumination expansion microscopy reveals microbial cytoskeleton organization, Acs Nano, vol.11, pp.12677-12686, 2017. ,
Ultrafast superresolution fluorescence imaging with spinning disk confocal microscope optics, Mol. Biol. Cell, vol.26, pp.1743-1751, 2015. ,
Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes, Angewandte Chemie Int. Ed. Engl, vol.47, pp.6172-6176, 2008. ,
Adaptive-illumination STED nanoscopy, Proc. Natl. Acad. Sci. USA, vol.114, pp.9797-9802, 2017. ,
Super-resolution structured illumination microscopy, Chem. Rev, vol.117, pp.13890-13908, 2017. ,
Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy, Opt. Lett, vol.19, p.780, 1994. ,
Gated STED microscopy with time-gated single-photon avalanche diode, Biomed. Opt. Express, vol.6, p.2258, 2015. ,
Ultra-high resolution imaging by fluorescence photoactivation localization microscopy, Biophys. J, vol.91, pp.4258-4272, 2006. ,
Three-dimensional superresolution imaging by stochastic optical reconstruction microscopy, Sci. New York N Y, vol.319, pp.810-813, 2008. ,
Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms, Nat. Methods, vol.10, pp.653-658, 2013. ,
Fast, long-term, super-resolution imaging with Hessian structured illumination microscopy, Nat. Biotechnol, vol.36, pp.451-459, 2018. ,
The Airyscan detector from ZEISS: confocal imaging with improved signal-to-noise ratio and super-resolution, Nat. Methods, vol.12, 2015. ,
Filopodome mapping identifies p130Cas as a mechanosensitive regulator of filopodia stability, Curr. Biol. Cb, vol.29, pp.202-216, 2019. ,
About samples, giving examples: optimized single molecule localization microscopy, Methods, vol.174, pp.100-114, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02146929
Fast, three-dimensional super-resolution imaging of live cells, Nat. Methods, vol.8, pp.499-508, 2011. ,
Designing a rigorous microscopy experiment: validating methods and avoiding bias, J. Cell Biol, vol.218, pp.1452-1466, 2019. ,
Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT, Nat. Methods, vol.11, pp.313-318, 2014. ,
Expansion microscopy of lipid membranes, 2019. ,
Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission, Proc. Natl. Acad. Sci. USA 97, pp.8206-8210, 2000. ,
Super-resolution video microscopy of live cells by structured illumination, Nat. Methods, vol.6, pp.339-342, 2009. ,
Visualization of GFP mouse embryos and embryonic hearts using various tissue clearing methods and 3D imaging modalities, European Microscopy Congress 2016: Proceedings, pp.256-257, 2016. ,
Fluorescent proteins at a glance, J. Cell Sci, vol.124, pp.157-160, 2010. ,
Multiplexed and scalable superresolution imaging of three-dimensional protein localization in size-adjustable tissues, Nat. Biotechnol, vol.34, pp.973-981, 2016. ,
FPbase: a community-editable fluorescent protein database, Nat. Methods, vol.16, pp.277-278, 2019. ,
Novel organic dyes for multicolor localization-based super-resolution microscopy, J. Biophotonics, vol.9, pp.161-170, 2015. ,
Switchable fluorophores for single-molecule localization microscopy, Chem. Rev, vol.118, pp.9412-9454, 2018. ,
Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics, Science, vol.349, pp.3500-3500, 2015. ,
Mechanically resolved imaging of bacteria using expansion microscopy, PLoS Biol, vol.17, p.3000268, 2019. ,
Quantifying and optimizing single-molecule switching nanoscopy at high speeds, PLoS ONE, vol.10, 2015. ,
Breaking the axial diffraction limit: a guide to axial super-resolution fluorescence microscopy, Laser Photonics Rev, vol.12, p.1700333, 2018. ,
Re-scan confocal microscopy: scanning twice for better resolution, Biomed. Opt. Express, vol.4, pp.2644-2656, 2013. ,
Single-molecule localization to study cytoskeletal structures, membrane complexes, and mechanosensors, Biophys. Rev, vol.11, pp.745-756, 2019. ,
The development of fluorescence microscopy, Encyclopedia of Life Sciences (ELS), 2010. ,
Enhanced photon collection enables four dimensional fluorescence nanoscopy of living systems, Nat. Commun, vol.9, pp.1-9, 2018. ,
Deep learning for cellular image analysis, Nat. Methods, vol.16, pp.1233-1246, 2019. ,
Time-gating improves the spatial resolution of STED microscopy, Opt. Express, vol.19, pp.4242-4254, 2011. ,
Image scanning microscopy, Phys. Rev. Lett, vol.104, 2010. ,
Simultaneous dual-color 3D STED microscopy, Opt. Express, vol.22, p.7028, 2014. ,
Deep learning massively accelerates super-resolution localization microscopy, Nat. Biotechnol, vol.36, p.460, 2018. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02074397
Superresolution imaging using single-molecule localization, Annu. Rev. Phys. Chem, vol.61, pp.345-367, 2010. ,
Fix your membrane receptor imaging: actin cytoskeleton and CD4 membrane organization disruption by chemical fixation, Front. Immunol, vol.10, p.675, 2019. ,
Measuring expansion from macro-to nanoscale using NPC as intrinsic reporter, J. Biophotonics, vol.12, p.201900018, 2019. ,
FDISCO: Advanced solvent-based clearing method for imaging whole organs, Sci. Adv, vol.5, p.8355, 2019. ,
Nonlinear structured-illumination microscopy with a photoswitchable protein reveals cellular structures at 50-nm resolution, Proc. Natl. Acad. Sci. USA, vol.109, 2012. ,
Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM), Nat. Methods, vol.3, pp.793-796, 2006. ,
Fluorescence nanoscopy in cell biology, Nat. Rev. Mol. Cell Biol, vol.18, pp.685-701, 2017. ,
Super-resolution microscopy demystified, Nat. Cell Biol, vol.21, pp.72-84, 2019. ,
XL-SIM: extending superresolution into deeper layers, Photonics, vol.4, p.33, 2017. ,
Label-retention expansion microscopy, Biorxiv, vol.687954, 2019. ,
Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes, Proc. Natl. Acad. Sci. USA, vol.104, pp.20308-20313, 2007. ,
Visualizing and discovering cellular structures with super-resolution microscopy, Science, vol.361, pp.880-887, 2018. ,
Frontiers in structured illumination microscopy, vol.3, p.667, 2016. ,
Superresolution architecture of cornerstone focal adhesions in human pluripotent stem cells, Nat. Commun, vol.10, pp.1-15, 2019. ,
Strong increase in the autofluorescence of cells signals struggle for survival, Sci. Rep, vol.8, p.12088, 2018. ,
URL : https://hal.archives-ouvertes.fr/inserm-02173933
, , 2014.
, Super-resolution microscopy: a comparison of commercially available options, Fluorescence Microscopy: Super-Resolution and Other Novel Techniques, pp.199-212
Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies, Nat. Biotechnol, vol.34, pp.987-992, 2016. ,
Between life and death: strategies to reduce phototoxicity in super-resolution microscopy, J. Phys. D: Appl. Phys, vol.53, p.163001, 2020. ,
X10 expansion microscopy enables 25-nm resolution on conventional microscopes, EMBO Rep, vol.19, p.45836, 2018. ,
Single-molecule localization microscopy analysis with ImageJ, J. Phys. D Appl. Phys, vol.52, p.203002, 2019. ,
How to switch a fluorophore: from undesired blinking to controlled photoswitching, Chem. Soc. Rev, vol.43, pp.1076-1087, 2014. ,
Direct stochastic optical reconstruction microscopy with standard fluorescent probes, Nat. Protoc, vol.6, pp.991-1009, 2011. ,
An introduction to optical super-resolution microscopy for the adventurous biologist, Methods Appl. Fluores, vol.6, p.22003, 2018. ,
Ultrastructure of the axonal periodic scaffold reveals a braid-like organization of actin rings, Nat. Commun, vol.10, pp.1-13, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02423801
Spastin and ESCRT-III coordinate mitotic spindle disassembly and nuclear envelope sealing, Nature, vol.522, pp.231-235, 2015. ,
Artificial intelligence for microscopy: what you should know, Biochem. Soc. Trans, vol.47, pp.1029-1040, 2019. ,
ZeroCostDL4Mic: an open platform to simplify access and use of Deep-Learning in Microscopy, 2020. ,
, , 2015.
, Light-induced cell damage in live-cell super-resolution microscopy, Sci. Rep, vol.5, p.15348
Expansion microscopy: principles and uses in biological research, Nat. Methods, vol.16, pp.33-41, 2019. ,
Imaging cellular structures in super-resolution with SIM, STED and localisation microscopy: a practical comparison, Sci. Rep, vol.6, p.27290, 2016. ,
Image artifacts in single molecule localization microscopy: why optimization of sample preparation protocols matters, Sci. Rep, vol.5, p.7924, 2015. ,
STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis, Nature, vol.440, pp.935-939, 2006. ,
Faster, sharper, and deeper: structured illumination microscopy for biological imaging, Nat. Methods, vol.15, pp.1011-1019, 2018. ,
Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy, Nat. Methods, vol.9, pp.749-754, 2012. ,
Instant super-resolution imaging in live cells and embryos via analog image processing, Nat. Methods, vol.10, pp.1122-1126, 2013. ,
Highly photostable, reversibly photoswitchable fluorescent protein with high contrast ratio for live-cell superresolution microscopy, Proc. Natl. Acad. Sci. USA, vol.113, pp.10364-10369, 2016. ,
Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy, Nat. Biotechnol, vol.35, pp.757-764, 2017. ,
Faster super-resolution imaging with auto-correlation two-step deconvolution, 2018. ,