R. Blakemore, Magnetotactic bacteria, Science, vol.190, issue.4212, pp.377-379, 1975.

C. B. Flies, J. Peplies, and D. Schu?ler, Combined Approach for Characterization of Uncultivated Magnetotactic Bacteria from Various Aquatic Environments, Applied and Environmental Microbiology, vol.71, issue.5, pp.2723-2731, 2005.

W. Lin, Y. Wang, Y. Gorby, K. Nealson, and Y. K. Pan, Integrating niche-based process and spatial process in biogeography of magnetotactic bacteria, Scientific Reports, vol.3, issue.1, p.1643, 2013.

D. A. Bazylinski, T. J. Williams, C. T. Lefèvre, R. J. Berg, C. L. Zhang et al., Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov., Magnetococcales ord. nov.) at the base of the Alphaproteobacteria, International Journal of Systematic and Evolutionary Microbiology, vol.63, issue.Pt_3, pp.801-808, 2013.

M. P. Ferla, J. C. Thrash, S. J. Giovannoni, and W. M. Patrick, New rRNA Gene-Based Phylogenies of the Alphaproteobacteria Provide Perspective on Major Groups, Mitochondrial Ancestry and Phylogenetic Instability, PLoS ONE, vol.8, issue.12, p.e83383, 2013.

B. Ji, S. Zhang, W. Zhang, Z. Rouy, F. Alberto et al., The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of P roteobacteria, Environmental Microbiology, vol.19, issue.3, pp.1103-1119, 2017.

W. Lin, W. Zhang, X. Zhao, A. P. Roberts, G. A. Paterson et al., Genomic expansion of magnetotactic bacteria reveals an early common origin of magnetotaxis with lineage-specific evolution, The ISME Journal, vol.12, issue.6, pp.1508-1519, 2018.

D. H. Parks, M. Chuvochina, D. W. Waite, C. Rinke, A. Skarshewski et al., A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life, Nature Biotechnology, vol.36, issue.10, pp.996-1004, 2018.

C. Jogler, W. Lin, A. Meyerdierks, M. Kube, E. Katzmann et al., Toward Cloning of the Magnetotactic Metagenome: Identification of Magnetosome Island Gene Clusters in Uncultivated Magnetotactic Bacteria from Different Aquatic Sediments, Applied and Environmental Microbiology, vol.75, issue.12, pp.3972-3979, 2009.

Y. Chen, Y. Chen, C. Shi, Z. Huang, Y. Zhang et al., SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data, GigaScience, vol.7, issue.1, p.120, 2017.

S. Nurk, D. Meleshko, A. Korobeynikov, and P. A. Pevzner, metaSPAdes: a new versatile metagenomic assembler, Genome Research, vol.27, issue.5, pp.824-834, 2017.

D. D. Kang, J. Froula, R. Egan, and Z. Wang, MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities, PeerJ, vol.3, p.e1165, 2015.

H. Lin and Y. Liao, Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes, Scientific Reports, vol.6, issue.1, p.24175, 2016.

C. M. Sieber, A. J. Probst, A. Sharrar, B. C. Thomas, M. Hess et al., Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy, Nature Microbiology, vol.3, issue.7, pp.836-843, 2018.

A. Gurevich, V. Saveliev, N. Vyahhi, and G. Tesler, QUAST: quality assessment tool for genome assemblies, Bioinformatics, vol.29, issue.8, pp.1072-1075, 2013.

D. H. Parks, M. Imelfort, C. T. Skennerton, P. Hugenholtz, and G. W. Tyson, CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes, Genome Research, vol.25, issue.7, pp.1043-1055, 2015.

B. Langmead and S. L. Salzberg, Fast gapped-read alignment with Bowtie 2, Nature Methods, vol.9, issue.4, pp.357-359, 2012.

H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan et al., The Sequence Alignment/Map format and SAMtools, Bioinformatics, vol.25, issue.16, pp.2078-2079, 2009.

T. Tatusova, M. Dicuccio, A. Badretdin, V. Chetvernin, E. P. Nawrocki et al., NCBI prokaryotic genome annotation pipeline, Nucleic Acids Research, vol.44, issue.14, pp.6614-6624, 2016.

S. F. Altschul, T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997.

L. M. Rodriguez-r and K. T. Konstantinidis, The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes, PeerJ Prepr, vol.4, pp.1900-1901, 2016.

A. Arakaki, M. Shibusawa, M. Hosokawa, and T. Matsunaga, Preparation of Genomic DNA from a Single Species of Uncultured Magnetotactic Bacterium by Multiple-Displacement Amplification, Applied and Environmental Microbiology, vol.76, issue.5, pp.1480-1485, 2010.

S. Spring, R. Amann, W. Ludwig, K. H. Schleifer, D. Schüler et al., Phylogenetic Analysis of Uncultured Magnetotactic Bacteria from the Alpha-Subclass of Proteobacteria, Systematic and Applied Microbiology, vol.17, issue.4, pp.501-508, 1995.