Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2

S. Haridas , R. Albert , M. Binder (1) , J. Bloem , Kurt Labutti (2) , A. Salamov (3) , B. Andreopoulos , S.E. Baker , Kerrie Barry (4) , G. Bills , B.H. Bluhm , C. Cannon , R. Castanera , D.E. Culley , C. Daum , D. Ezra , J.B. González , Bernard Henrissat (5) , A. Kuo , C. Liang , Anna Lipzen , F. Lutzoni , J. Magnuson , S.J. Mondo , M. Nolan , R.A. Ohm , J. Pangilinan , H.-J. Park , L. Ramírez , M. Alfaro , H. Sun , A. Tritt , Y. Yoshinaga , L.-H. Zwiers , B.G. Turgeon , S.B. Goodwin , J.W. Spatafora , P.W. Crous , I.V. Grigoriev , Thirumalaiselvi Ulaganathan , Rong Shi , Deqiang Yao , Ruo-Xu Gu , Marie-Line Garron , Maia Cherney , D Peter Tieleman , Eric Sterner , Guoyun Li , Lingyun Li , Robert Linhardt , Miroslaw Cygler , Niël van Wyk , Michel Drancourt , Laurent Kremer , Otto Miettinen , Robert Riley , Dan Cullen , Ronald de Vries , Matthieu Hainaut (5) , Annele Hatakka , Kristiina Hildén , Rita Kuo , Miia Mäkelä , Laura Sandor , Joseph Spatafora , Igor Grigoriev , David Hibbett

1 CBS-KNAW Fungal Biodiversity Centre
2 US Department of Energy Joint Genome Institute
3 DOE - Department of Energy / Joint Genome Institute
4 United States Department of Energy
5 AFMB - Architecture et fonction des macromolécules biologiques

ABSTRACT We report here the first genome sequence of the white-rot fungus Obba rivulosa (Polyporales, Basidiomycota), a polypore known for its lignin-decomposing ability. The genome is based on the homokaryon 3A-2 originating in Finland. The genome is typical in size and carbohydrate active enzyme (CAZy) content for wood-decomposing basidiomycetes.

Keywords: New taxa; Rhizodiscinaceae Crous; active site; crystal structure; heparin lyase; protein dynamics; substrate specificity; CAZy database; Mycobacterium tuberculosis; Rpfs; glycoside hydrolase; trehalose; Aulographales Crous; Spatafora; Haridas & Grigoriev; Coniosporiaceae Crous; Coniosporiales Crous; Eremomycetales Crous; Fungal evolution; Genome-based prediction; Lineolataceae Crous; Lineolatales Crous; Machine-learning

Domains: Life Sciences [q-bio]

S. Haridas, R. Albert, M. Binder, J. Bloem, Kurt Labutti, et al.. Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2. Genome Announcements, 2016, 4 (5), pp.112-122. ⟨10.1128/genomeA.00976-16⟩. ⟨hal-03508713⟩